Scientific production of: Bioinformatics


Journal papers
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#1 "GADPO: Genetic Algorithm based on Dominance for Primer Optimization". Fernando M. Rodríguez-Bejarano, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Expert Systems With Applications, Volume 238, Part D, 122206, Pergamon-Elsevier Science, Oxford, England, UK, 2024, pp. 1-15, ISSN: 0957-4174. DOI: 10.1016/j.eswa.2023.122206. (JCR impact factor = 8.5 in 2022, Quartile = Q1)
#2 "A Multi-Objective Butterfly Optimization Algorithm for Protein Encoding". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Applied Soft Computing, Volume 139, 110269, Elsevier, Amsterdam, Netherlands, 2023, pp. 1-14, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2023.110269. (JCR impact factor = 8.7 in 2022, Quartile = Q1)
#3 "Algorithms for Computational Biology: Eighth Edition". Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 20, Issue 3, IEEE Computer Society, Los Alamitos, CA, USA, 2023, pp. 1626-1627, ISSN: 1545-5963. DOI: 10.1109/TCBB.2022.3218808. (JCR impact factor = 4.5 in 2022, Quartile = Q1)
#4 "Boosting-based Ensemble of Global Network Aligners for PPI Network Alignment". Manuel Menor-Flores, Miguel A. Vega-Rodríguez. Expert Systems With Applications, Volume 230, 120671, Pergamon-Elsevier Science, Oxford, England, UK, 2023, pp. 1-16, ISSN: 0957-4174. DOI: 10.1016/j.eswa.2023.120671. (JCR impact factor = 8.5 in 2022, Quartile = Q1)
#5 "Iterative Level-0: A New and Fast Algorithm to Traverse Mating Networks Calculating the Inbreeding and Relationship Coefficients". Manuel Menor-Flores, Miguel A. Vega-Rodríguez, Felipe Molina. Computers in Biology and Medicine, Volume 164, 107296, Pergamon-Elsevier Science, Oxford, England, UK, 2023, pp. 1-9, ISSN: 0010-4825. DOI: 10.1016/j.compbiomed.2023.107296. (JCR impact factor = 7.7 in 2022, Quartile = Q1)
#6 "Solving the RNA Inverse Folding Problem through Target Structure Decomposition and Multiobjective Evolutionary Computation". Álvaro Rubio-Largo, Nuria Lozano-García, José M. Granado-Criado, Miguel A. Vega-Rodríguez. Applied Soft Computing, Volume 147, 110779, Elsevier, Amsterdam, Netherlands, 2023, pp. 1-14, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2023.110779. (JCR impact factor = 8.7 in 2022, Quartile = Q1)
#7 "A Multi-Objective Optimization Approach for the Identification of Cancer Biomarkers from RNA-Seq Data". Veredas Coleto-Alcudia, Miguel A. Vega-Rodríguez. Expert Systems With Applications, Volume 193, 116480, Pergamon-Elsevier Science, Oxford, England, UK, 2022, pp. 1-10, ISSN: 0957-4174. DOI: 10.1016/j.eswa.2021.116480. (JCR impact factor = 8.5, Quartile = Q1)
#8 "Computational Design of Phage Cocktails Based on Phage-Bacteria Infection Networks". Manuel Menor-Flores, Miguel A. Vega-Rodríguez, Felipe Molina. Computers in Biology and Medicine, Volume 142, 105186, Pergamon-Elsevier Science, Oxford, England, UK, 2022, pp. 1-12, ISSN: 0010-4825. DOI: 10.1016/j.compbiomed.2021.105186. (JCR impact factor = 7.7, Quartile = Q1)
#9 "Decomposition-based Multi-Objective Optimization Approach for PPI Network Alignment". Manuel Menor-Flores, Miguel A. Vega-Rodríguez. Knowledge-Based Systems, Volume 243, 108527, Elsevier, Amsterdam, Netherlands, 2022, pp. 1-14, ISSN: 0950-7051. DOI: 10.1016/j.knosys.2022.108527. (JCR impact factor = 8.8, Quartile = Q1)
#10 "Exploiting Multi-level Parallel Metaheuristics and Heterogeneous Computing to Boost Phylogenetics". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Future Generation Computer Systems, Volume 127, Elsevier, Amsterdam, Netherlands, 2022, pp. 208-224, ISSN: 0167-739X. DOI: 10.1016/j.future.2021.09.011. (JCR impact factor = 7.5, Quartile = Q1)
#11 "Inter-Algorithm Multiobjective Cooperation for Phylogenetic Reconstruction on Amino Acid Data". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. IEEE Transactions on Cybernetics, Volume 52, Issue 5, IEEE, Piscataway, NJ, USA, 2022, pp. 3577-3591, ISSN: 2168-2267. DOI: 10.1109/TCYB.2020.2995464. (JCR impact factor = 11.8, Quartile = Q1)
#12 "Many-Objective Approach Based on Problem-Aware Mutation Operators for Protein Encoding". María Victoria Díaz-Galián, Miguel A. Vega-Rodríguez. Information Sciences, Volume 613, Elsevier Science, New York, NY, USA, 2022, pp. 376-400, ISSN: 0020-0255. DOI: 10.1016/j.ins.2022.09.048. (JCR impact factor = 8.1, Quartile = Q1)
#13 "MOMEA: Multi-Objective Mutation-based Evolutionary Algorithm for the alignment of protein networks". Irene Carrasco-Santano, Miguel A. Vega-Rodríguez. Applied Soft Computing, Volume 127, 109366, Elsevier, Amsterdam, Netherlands, 2022, pp. 1-14, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2022.109366. (JCR impact factor = 8.7, Quartile = Q1)
#14 "Multiobjective Evolutionary Computation for High-Order Genetic Interactions". José M. Granado-Criado, Álvaro Rubio-Largo, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Applied Soft Computing, Volume 128, 109538, Elsevier, Amsterdam, Netherlands, 2022, pp. 1-13, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2022.109538. (JCR impact factor = 8.7, Quartile = Q1)
#15 "Parallel Multi-Objective Optimization Approaches for Protein Encoding". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Journal of Supercomputing, Volume 78, Issue 4, Springer, Dordrecht, Netherlands, 2022, pp. 5118-5148, ISSN: 0920-8542. DOI: 10.1007/s11227-021-04073-z. (JCR impact factor = 3.3, Quartile = Q2)
#16 "PhageCocktail: An R Package to Design Phage Cocktails from Experimental Phage-Bacteria Infection Networks". María Victoria Díaz-Galián, Miguel A. Vega-Rodríguez, Felipe Molina. Computer Methods and Programs in Biomedicine, Volume 221, 106865, Elsevier Ireland, Clare, Ireland, 2022, pp. 1-9, ISSN: 0169-2607. DOI: 10.1016/j.cmpb.2022.106865. (JCR impact factor = 6.1, Quartile = Q1)
#17 "Systematic Analysis of Putative Phage-Phage Interactions on Minimum-Sized Phage Cocktails". Felipe Molina, Manuel Menor-Flores, Lucía Fernández, Miguel A. Vega-Rodríguez, Pilar García. Scientific Reports, Volume 12, 2458, Nature Research, Berlin, Germany, 2022, pp. 1-12, ISSN: 2045-2322. DOI: 10.1038/s41598-022-06422-1. (JCR impact factor = 4.6, Quartile = Q2)
#18 "A Metaheuristic Multi-Objective Optimization Method for Dynamical Network Biomarker Identification as Pre-Disease Stage Signal". Veredas Coleto-Alcudia, Miguel A. Vega-Rodríguez. Applied Soft Computing, Volume 109, 107544, Elsevier Science, Amsterdam, The Netherlands, 2021, pp. 1-13, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2021.107544. (JCR impact factor = 8.263, Quartile = Q1)
#19 "Algorithms for Computational Biology: Seventh Edition". Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 18, Issue 6, IEEE Computer Society, Los Alamitos, CA, USA, 2021, pp. 2059-2060, ISSN: 1545-5963. DOI: 10.1109/TCBB.2021.3099915. (JCR impact factor = 3.702, Quartile = Q1)
#20 "Algorithms for Computational Biology: Sixth Edition". Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 18, Issue 1, IEEE Computer Society, Los Alamitos, CA, USA, 2021, pp. 1-1, ISSN: 1545-5963. DOI: 10.1109/TCBB.2020.3023866. (JCR impact factor = 3.702, Quartile = Q1)
#21 "A Multi-Objective Optimization Procedure for Solving the High-Order Epistasis Detection Problem". José M. Granado-Criado, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Expert Systems With Applications, Volume 142, 113000, Pergamon-Elsevier Science, Oxford, England, UK, 2020, pp. 1-15, ISSN: 0957-4174. DOI: 10.1016/j.eswa.2019.113000. (JCR impact factor = 6.954, Quartile = Q1)
#22 "Algorithms for Computational Biology: Fifth Edition". Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 17, Issue 1, IEEE Computer Society, Los Alamitos, CA, USA, 2020, pp. 1-1, ISSN: 1545-5963. DOI: 10.1109/TCBB.2019.2949851. (JCR impact factor = 3.710, Quartile = Q1)
#23 "Artificial Bee Colony algorithm based on Dominance (ABCD) for a hybrid gene selection method". Veredas Coleto-Alcudia, Miguel A. Vega-Rodríguez. Knowledge-Based Systems, Volume 205, 106323, Elsevier Science, Amsterdam, The Netherlands, 2020, pp. 1-11, ISSN: 0950-7051. DOI: 10.1016/j.knosys.2020.106323. (JCR impact factor = 8.038, Quartile = Q1)
#24 "GPU Acceleration of Fitch Parsimony on Protein Data: From Kepler to Turing". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Antonio Zahinos-Márquez, Leonel Sousa. Journal of Supercomputing, Volume 76, Issue 12, Springer, Dordrecht, The Netherlands, 2020, pp. 9827-9853, ISSN: 0920-8542. DOI: 10.1007/s11227-020-03225-x. (JCR impact factor = 2.474, Quartile = Q2)
#25 "Parallel Evolutionary Computation for Multiobjective Gene Interaction Analysis". Francisco Gonçalves, Sergio Santander-Jiménez, Leonel Sousa, José M. Granado-Criado, Aleksandar Ilic. Journal of Computational Science, Volume 40, 101068, Elsevier Science, Amsterdam, The Netherlands, 2020, pp. 1-15, ISSN: 1877-7503. DOI: 10.1016/j.jocs.2019.101068. (JCR impact factor = 3.976, Quartile = Q1)
#26 "A Multiobjective Adaptive Approach for the Inference of Evolutionary Relationships in Protein-Based Scenarios". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Information Sciences, Volume 485, Elsevier Science, New York, NY, USA, 2019, pp. 281-300, ISSN: 0020-0255. DOI: 10.1016/j.ins.2019.02.020. (JCR impact factor = 5.910, Quartile = Q1)
#27 "Algorithms for Computational Biology: Fourth Edition". Carlos Martín-Vide, Miguel A. Vega-Rodríguez. Journal of Computational Biology, Volume 26, Issue 9, Mary Ann Liebert, New Rochelle, NY, USA, 2019, pp. 891-892, ISSN: 1066-5277. DOI: 10.1089/cmb.2019.29023.cmv. (JCR impact factor = 1.054, Quartile = Q3)
#28 "Algorithms for Computational Biology: Third Edition". Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 16, Issue 3, IEEE Computer Society, Los Alamitos, CA, USA, 2019, pp. 701-702, ISSN: 1545-5963. DOI: 10.1109/TCBB.2019.2911264. (JCR impact factor = 3.015, Quartile = Q1)
#29 "Comparative Analysis of Intra-Algorithm Parallel Multiobjective Evolutionary Algorithms: Taxonomy Implications on Bioinformatics Scenarios". Sergio Santander-Jiménez, Miguel A. Vega-Rodriguez. IEEE Transactions on Parallel and Distributed Systems, Volume 30, Issue 1, IEEE Computer Society, Los Alamitos, CA, USA, 2019, pp. 63-78, ISSN: 1045-9219. DOI: 10.1109/TPDS.2018.2854788. (JCR impact factor = 2.600, Quartile = Q2)
#30 "Comparative Assessment of GPGPU Technologies to Accelerate Objective Functions: A Case Study on Parsimony". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Jorge Vicente-Viola, Leonel Sousa. Journal of Parallel and Distributed Computing, Volume 126, Academic Press-Elsevier Science, San Diego, CA, USA, 2019, pp. 67-81, ISSN: 0743-7315. DOI: 10.1016/j.jpdc.2018.12.006. (JCR impact factor = 2.296, Quartile = Q2)
#31 "Multi-Objective Artificial Bee Colony for Designing Multiple Genes Encoding the Same Protein". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado-Criado. Applied Soft Computing, Volume 74, Elsevier Science, Amsterdam, The Netherlands, 2019, pp. 90-98, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2018.10.023. (JCR impact factor = 5.472, Quartile = Q1)
#32 "Multi-objective Memetic Meta-heuristic Algorithm for Encoding the Same Protein with Multiple Genes". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Expert Systems With Applications, Volume 136, Pergamon-Elsevier Science, Oxford, England, UK, 2019, pp. 83-93, ISSN: 0957-4174. DOI: 10.1016/j.eswa.2019.06.031. (JCR impact factor = 5.452, Quartile = Q1)
#33 "Multiobjective Metaheuristic to Design RNA Sequences". Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. IEEE Transactions on Evolutionary Computation, Volume 23, Issue 1, IEEE, Piscataway, NJ, USA, 2019, pp. 156-169, ISSN: 1089-778X. DOI: 10.1109/TEVC.2018.2844116. (JCR impact factor = 11.169, Quartile = Q1)
#34 "Multi-Objective Protein Encoding: Redefinition of the Problem, New Problem-aware Operators, and Approach based on Variable Neighborhood Search". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Information Sciences, Volume 500, Elsevier Science, New York, NY, USA, 2019, pp. 173-189, ISSN: 0020-0255. DOI: 10.1016/j.ins.2019.05.088. (JCR impact factor = 5.910, Quartile = Q1)
#35 "Parallel Computing in Bioinformatics: A View from High-Performance, Heterogeneous, and Cloud Computing". Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Journal of Supercomputing, Volume 75, Issue 7, Springer, Dordrecht, The Netherlands, 2019, pp. 3369-3373, ISSN: 0920-8542. DOI: 10.1007/s11227-019-02934-2. (JCR impact factor = 2.469, Quartile = Q2)
#36 "Parallel Programming in Bioinformatics: Some Interesting Approaches". Miguel A. Vega-Rodríguez, José M. Granado-Criado. International Journal of Parallel Programming, Volume 47, Issue 2, Springer-Plenum Publishers, New York, NY, USA, 2019, pp. 293-295, ISSN: 0885-7458. DOI: 10.1007/s10766-018-0605-7. (JCR impact factor = 1.244, Quartile = Q3)
#37 "A Characteristic-based Framework for Multiple Sequence Aligners". Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. IEEE Transactions on Cybernetics, Volume 48, Issue 1, IEEE, Piscataway, NJ, USA, 2018, pp. 41-51, ISSN: 2168-2267. DOI: 10.1109/TCYB.2016.2621129. (JCR impact factor = 10.387, Quartile = Q1)
#38 "A Parallel Multiobjective Metaheuristic for Multiple Sequence Alignment". Álvaro Rubio-Largo, Mauro Castelli, Leonardo Vanneschi, Miguel A. Vega-Rodríguez. Journal of Computational Biology, Volume 25, Issue 9, Mary Ann Liebert, New Rochelle, NY, USA, 2018, pp. 1009-1022, ISSN: 1066-5277. DOI: 10.1089/cmb.2018.0031. (JCR impact factor = 0.879, Quartile = Q3)
#39 "Multiobjective Characteristic-based Framework for Very-Large Multiple Sequence Alignment". Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Applied Soft Computing, Volume 69, Elsevier Science, Amsterdam, The Netherlands, 2018, pp. 719-736, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2017.06.022. (JCR impact factor = 4.873, Quartile = Q1)
#40 "Multiobjective Frog-Leaping Optimization for the Study of Ancestral Relationships in Protein Data". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. IEEE Transactions on Evolutionary Computation, Volume 22, Issue 6, IEEE, Piscataway, NJ, USA, 2018, pp. 879-893, ISSN: 1089-778X. DOI: 10.1109/TEVC.2017.2774599. (JCR impact factor = 8.508, Quartile = Q1)
#41 "Parallel Computing in Computational Biology: A Technological Point of View". Miguel A. Vega-Rodríguez, José M. Granado-Criado. Journal of Computational Biology, Volume 25, Issue 8, Mary Ann Liebert, New Rochelle, NY, USA, 2018, pp. 837-840, ISSN: 1066-5277. DOI: 10.1089/cmb.2018.29018.mavr. (JCR impact factor = 0.879, Quartile = Q3)
#42 "Parallelism in Computational Biology: A View from Diverse High-Performance Computing Applications". Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. International Journal of High Performance Computing Applications, Volume 32, Issue 3, SAGE Publications, London, England, UK, 2018, pp. 317-320, ISSN: 1094-3420. DOI: 10.1177/1094342016677599. (JCR impact factor = 1.956, Quartile = Q2)
#43 "Searching for Common Patterns on Protein Sequences by means of a Parallel Hybrid Honey-Bee Mating Optimization Algorithm". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Parallel Computing, Volume 76, Elsevier Science, Amsterdam, The Netherlands, 2018, pp. 1-17, ISSN: 0167-8191. DOI: 10.1016/j.parco.2018.04.001. (JCR impact factor = 1.281, Quartile = Q3)
#44 "Swarm Intelligence for Optimizing the Parameters of Multiple Sequence Aligners". Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Swarm and Evolutionary Computation, Volume 42, Elsevier Science, Amsterdam, The Netherlands, 2018, pp. 16-28, ISSN: 2210-6502. DOI: 10.1016/j.swevo.2018.04.003. (JCR impact factor = 6.330, Quartile = Q1)
#45 "A Hybrid MPI/OpenMP Parallel Implementation of NSGA-II for Finding Patterns in Protein Sequences". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Journal of Supercomputing, Volume 73, Issue 6, Springer, Dordrecht, The Netherlands, 2017, pp. 2285-2312, ISSN: 0920-8542. DOI: 10.1007/s11227-016-1916-3. (JCR impact factor = 1.532, Quartile = Q2)
#46 "Accelerating the Phylogenetic Parsimony Function on Heterogeneous Systems". Sergio Santander-Jiménez, Aleksandar Ilic, Leonel Sousa, Miguel A. Vega-Rodríguez. Concurrency and Computation: Practice and Experience, Volume 29, Issue 8, e4046, Wiley-Blackwell, Hoboken, NJ, England, UK, 2017, pp. 1-15, ISSN: 1532-0626. DOI: 10.1002/cpe.4046. (JCR impact factor = 1.114, Quartile = Q3)
#47 "Asynchronous Non-Generational Model to Parallelize Metaheuristics: A Bioinformatics Case Study". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. IEEE Transactions on Parallel and Distributed Systems, Volume 28, Issue 7, IEEE Computer Society, Los Alamitos, CA, USA, 2017, pp. 1825-1838, ISSN: 1045-9219. DOI: 10.1109/TPDS.2016.2645764. (JCR impact factor = 3.971, Quartile = Q1)
#48 "Parallelism-based Approaches in Computational Biology: A View from Diverse Case Studies". Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Cluster Computing-The Journal of Networks Software Tools and Applications, Volume 20, Issue 3, Springer, New York, NY, USA, 2017, pp. 1865-1867, ISSN: 1386-7857. DOI: 10.1007/s10586-017-1037-7. (JCR impact factor = 1.601, Quartile = Q2)
#49 "Reducing Alignment Time Complexity of Ultra-large Sets of Sequences". Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Journal of Computational Biology, Volume 24, Issue 11, Mary Ann Liebert, New Rochelle, NY, USA, 2017, pp. 1144-1152, ISSN: 1066-5277. DOI: 10.1089/cmb.2017.0097. (JCR impact factor = 1.191, Quartile = Q2)
#50 "Using Biological Knowledge for Multiple Sequence Aligner Decision Making". Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Information Sciences, Volume 420, Elsevier Science, New York, NY, USA, 2017, pp. 278-298, ISSN: 0020-0255. DOI: 10.1016/j.ins.2017.08.069. (JCR impact factor = 4.305, Quartile = Q1)
#51 "Using Mixed Mode Programming to Parallelize an Indicator-Based Evolutionary Algorithm for Inferring Multiobjective Phylogenetic Histories". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Soft Computing, Volume 21, Issue 19, Springer, New York, USA, 2017, pp. 5601-5620, ISSN: 1432-7643. DOI: 10.1007/s00500-016-2219-6. (JCR impact factor = 2.367, Quartile = Q2)
#52 "A Comparative Study of Different Motif Occurrence Models applied to a Hybrid Multiobjective Shuffle Frog Leaping Algorithm". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Computer Journal, Volume 59, Issue 3, Oxford University Press, Oxford, England, UK, 2016, pp. 384-402, ISSN: 0010-4620. DOI: 10.1093/comjnl/bxv055. (JCR impact factor = 0.711, Quartile = Q4)
#53 "A Hybrid Multiobjective Memetic Metaheuristic for Multiple Sequence Alignment". Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. IEEE Transactions on Evolutionary Computation, Volume 20, Issue 4, IEEE, Piscataway, NJ, USA, 2016, pp. 499-514, ISSN: 1089-778X. DOI: 10.1109/TEVC.2015.2469546. (JCR impact factor = 10.629, Quartile = Q1)
#54 "Fine-grained parallelization of fitness functions in bioinformatics optimization problems: gene selection for cancer classification and biclustering of gene expression data". Juan A. Gomez-Pulido, Jose L. Cerrada-Barrios, Sebastian Trinidad-Amado, Jose M. Lanza-Gutierrez, Ramon A. Fernandez-Diaz, Broderick Crawford and Ricardo Soto. BMC Bioinformatics, Vol. 17, Num. 1, BioMed Central, London, United Kingdom, 2016, 2016, pp. 1-13, ISSN: 1471-2105. DOI: 10.1186/s12859-016-1200-9. (JCR impact factor = 2.448, Quartile = Q1)
#55 "Hybrid Multiobjective Artificial Bee Colony for Multiple Sequence Alignment". Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. Applied Soft Computing, Volume 41, Elsevier Science, Amsterdam, The Netherlands, 2016, pp. 157-168, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2015.12.034. (JCR impact factor = 3.541, Quartile = Q1)
#56 "Performance Evaluation of Dominance-Based and Indicator-Based Multiobjective Approaches for Phylogenetic Inference". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Information Sciences, Volume 330, Elsevier Science, New York, NY, USA, 2016, pp. 293-314, ISSN: 0020-0255. DOI: 10.1016/j.ins.2015.10.021. (JCR impact factor = 4.832, Quartile = Q1)
#57 "A Hybrid Approach to Parallelize a Fast Non-Dominated Sorting Genetic Algorithm for Phylogenetic Inference". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Concurrency and Computation: Practice and Experience, Volume 27, Issue 3, Wiley-Blackwell, Malden, England, UK, 2015, pp. 702-734, ISSN: 1532-0626. DOI: 10.1002/cpe.3269. (JCR impact factor = 0.942, Quartile = Q3)
#58 "Accelerating Bioinformatics Applications via Emerging Parallel Computing Systems". Juan A. Gomez-Pulido, Bertil Schmidt, and Wu-chun Feng. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 12, Issue 5, IEEE Computer Society, Los Alamitos, CA, USA, 2015, pp. 971-972, ISSN: 1545-5963. DOI: 10.1109/TCBB.2015.2457736. (JCR impact factor = 1.609, Quartile = Q1)
#59 "Finding Patterns in Protein Sequences by Using a Hybrid Multiobjective Teaching Learning Based Optimization Algorithm". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 12, Issue 3, IEEE Computer Society, Los Alamitos, CA, USA, 2015, pp. 656-666, ISSN: 1545-5963. DOI: 10.1109/TCBB.2014.2369043. (JCR impact factor = 1.609, Quartile = Q1)
#60 "Multiobjective Optimization Algorithms for Motif Discovery in DNA Sequences". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Genetic Programming and Evolvable Machines, Volume 16, Issue 2, Springer, New York, NY, USA, 2015, pp. 167-209, ISSN: 1389-2576. DOI: 10.1007/s10710-014-9232-2. (JCR impact factor = 1.143, Quartile = Q2)
#61 "On the Design of Shared Memory Approaches to Parallelize a Multiobjective Bee-Inspired Proposal for Phylogenetic Reconstruction". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Information Sciences, Volume 324, Elsevier Science, New York, NY, USA, 2015, pp. 163-185, ISSN: 0020-0255. DOI: 10.1016/j.ins.2015.06.040. (JCR impact factor = 3.364, Quartile = Q1)
#62 "Parallel Multiobjective Metaheuristics for Inferring Phylogenies on Multicore Clusters". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. IEEE Transactions on Parallel and Distributed Systems, Volume 26, Issue 6, IEEE Computer Society, Los Alamitos, CA, USA, 2015, pp. 1678-1692, ISSN: 1045-9219. DOI: 10.1109/TPDS.2014.2325828. (JCR impact factor = 2.661, Quartile = Q1)
#63 "Parallelism in Bioinformatics: A View from Different Parallelism-based Technologies". Miguel A. Vega-Rodríguez, David L. González-Álvarez. Parallel Computing, Volume 42, Elsevier Science, Amsterdam, The Netherlands, 2015, pp. 1-3, ISSN: 0167-8191. DOI: 10.1016/j.parco.2015.02.001. (JCR impact factor = 1.000, Quartile = Q3)
#64 "Parallelism-based Technologies in Bioinformatics and Biomedicine: A View from Diverse Perspectives". Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Concurrency and Computation: Practice and Experience, Volume 27, Issue 18, Wiley-Blackwell, Malden, England, UK, 2015, pp. 5473-5475, ISSN: 1532-0626. DOI: 10.1002/cpe.3596. (JCR impact factor = 0.942, Quartile = Q3)
#65 "A Multiobjective Approach Based on the Behaviour of Fireflies to Generate Reliable DNA Sequences for Molecular Computing". Jose M. Chaves-González, Miguel A. Vega-Rodríguez. Applied Mathematics and Computation, Volume 227, Elsevier Science, New York, USA, 2014, pp. 291-308, ISSN: 0096-3003. DOI: 10.1016/j.amc.2013.11.032. (JCR impact factor = 1.551, Quartile = Q1)
#66 "Convergence Analysis of some Multiobjective Evolutionary Algorithms when Discovering Motifs". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Soft Computing, Volume 18, Issue 5, Springer, New York, USA, 2014, pp. 853-869, ISSN: 1432-7643. DOI: 10.1007/s00500-013-1103-x. (JCR impact factor = 1.271, Quartile = Q3)
#67 "DNA Strand Generation for DNA Computing by Using a Multi-Objective Differential Evolution Algorithm". José M. Chaves-González, Miguel A. Vega-Rodríguez. BioSystems, Volume 116, Elsevier Science, Oxford, England, UK, 2014, pp. 49-64, ISSN: 0303-2647. DOI: 10.1016/j.biosystems.2013.12.005. (JCR impact factor = 1.548, Quartile = Q2)
#68 "Gene Variants and Haplotypes Modifying Transcription Factor Binding Sites in the Human Cyclooxygenase 1 and 2 (PTGS1 and PTGS2) Genes". José A.G. Agúndez, David L. González-Álvarez, Miguel A. Vega-Rodríguez, Emilia Botello, Elena García-Martín. Current Drug Metabolism, Volume 15, Issue 2, Bentham Science, Sharjah, United Arab Emirates, 2014, pp. 182-195, ISSN: 1389-2002. DOI: 10.2174/138920021502140327180336. (JCR impact factor = 2.976, Quartile = Q2)
#69 "Parallelizing and Optimizing a Hybrid Differential Evolution with Pareto Tournaments for Discovering Motifs in DNA Sequences". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Journal of Supercomputing, Volume 70, Issue 2, Springer, Dordrecht, The Netherlands, 2014, pp. 880-905, ISSN: 0920-8542. DOI: 10.1007/s11227-014-1266-y. (JCR impact factor = 0.858, Quartile = Q2)
#70 "A Multiobjective Swarm Intelligence Approach based on Artificial Bee Colony for Reliable DNA Sequence Design". Jose M. Chaves-González, Miguel A. Vega-Rodríguez, José M. Granado-Criado. Engineering Applications of Artificial Intelligence, Volume 26, Issue 9, Pergamon-Elsevier Science, Oxford, England, UK, 2013, pp. 2045-2057, ISSN: 0952-1976. DOI: 10.1016/j.engappai.2013.04.011. (JCR impact factor = 1.962, Quartile = Q1)
#71 "A Parallel Cooperative Team of Multiobjective Evolutionary Algorithms for Motif Discovery". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Journal of Supercomputing, Volume 66, Issue 3, Springer, Dordrecht, The Netherlands, 2013, pp. 1576-1612, ISSN: 0920-8542. DOI: 10.1007/s11227-013-0951-6. (JCR impact factor = 0.841, Quartile = Q2)
#72 "Analysing the Scalability of Multiobjective Evolutionary Algorithms when Solving the Motif Discovery Problem". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Journal of Global Optimization, Volume 57, Issue 2, Springer, Dordrecht, The Netherlands, 2013, pp. 467-497, ISSN: 0925-5001. DOI: 10.1007/s10898-013-0069-7. (JCR impact factor = 1.355, Quartile = Q1)
#73 "Applying a Multiobjective Metaheuristic Inspired by Honey Bees to Phylogenetic Inference". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. BioSystems, Volume 114, Issue 1, Elsevier Science, Oxford, England, UK, 2013, pp. 39-55, ISSN: 0303-2647. DOI: 10.1016/j.biosystems.2013.07.001. (JCR impact factor = 1.472, Quartile = Q2)
#74 "Comparing Multiobjective Swarm Intelligence Metaheuristics for DNA Motif Discovery". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Engineering Applications of Artificial Intelligence, Volume 26, Issue 1, Pergamon-Elsevier Science, Oxford, England, UK, 2013, pp. 314-326, ISSN: 0952-1976. DOI: 10.1016/j.engappai.2012.06.014. (JCR impact factor = 1.962, Quartile = Q1)
#75 "Predicting DNA Motifs by Using Evolutionary Multiobjective Optimization". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. IEEE Transactions on Systems, Man, and Cybernetics - Part C: Applications and Reviews, Volume 42, Issue 6, IEEE, Piscataway, NJ, USA, 2012, pp. 913-925, ISSN: 1094-6977. DOI: 10.1109/TSMCC.2011.2172939. (JCR impact factor = 2.548, Quartile = Q1)
#76 "Parallel Niche Pareto AlineaGA - an Evolutionary Multiobjective Approach on Multiple Sequence Alignment". Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Journal of Integrative Bioinformatics, 8(3):174, IMBio, Informationsmanagement in der Biotechnologie e.V., Gatersleben, Germany, 2011, pp. 1-16, ISSN: 1613-4516. DOI: 10.2390/biecoll-jib-2011-174.
#77 "AlineaGA - A Genetic Algorithm with Local Search Optimization for Multiple Sequence Alignment". Fernando J. M. da Silva, Juan M. Sánchez Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. Applied Intelligence, Volume 32, Issue 2, Springer, Dordrecht, The Netherlands, 2010, pp. 164-172, ISSN: 0924-669X. DOI: 10.1007/s10489-009-0189-4. (JCR impact factor = 0.893, Quartile = Q3)

Book chapters
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#1 "Analysis of MOEA/D Approaches for Inferring Ancestral Relationships", in: "Hybrid Artificial Intelligence Systems. LNAI, Vol. 11734". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Springer, Switzerland, 2019, pp. 168-180. ISBN: 978-3-030-29858-6.
#2 "Improving Multiobjective Phylogenetic Searches by Using a Parallel epsilon-Dominance Based Adaptation of the Firefly Algorithm", in: "Euro-Par 2016: Parallel Processing Workshops, LNCS, Vol. 10104". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer International Publishing, Switzerland, 2017, pp. 384-396. ISBN: 978-3-319-58942-8.
#3 "Parallel Multi-Objective Optimization for High-Order Epistasis Detection", in: "Algorithms and Architectures for Parallel Processing, LNCS, Vol. 10393". Daniel Gallego-Sánchez, José M. Granado-Criado, Sergio Santander-Jiménez, Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez. Springer International Publishing, Switzerland, 2017, pp. 523-532. ISBN: 978-3-319-65481-2.
#4 "Inferring Multiobjective Phylogenetic Hypotheses by Using a Parallel Indicator-Based Evolutionary Algorithm", in: "Theory and Practice of Natural Computing, LNCS, Vol. 8890". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer, Switzerland, 2014, pp. 205-217. ISBN: 978-3-319-13748-3.
#5 "A Multiobjective Proposal Based on the Firefly Algorithm for Inferring Phylogenies", in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7833". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 141-152. ISBN: 978-3-642-37188-2.
#6 "A Multiobjective SFLA-Based Technique for Predicting Motifs in DNA Sequences", in: "Computer Aided Systems Theory, LNCS, Vol. 8111". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 235-242. ISBN: 978-3-642-53855-1.
#7 "A Parallel Multiobjective Algorithm Inspired by Fireflies for Inferring Evolutionary Trees on Multicore Machines", in: "Computer Aided Systems Theory, LNCS, Vol. 8111". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 412-419. ISBN: 978-3-642-53855-1.
#8 "DNA Base-Code Generation for Bio-molecular Computing by Using a Multiobjective Approach Based on SPEA2", in: "Computer Aided Systems Theory, LNCS, Vol. 8111". José M. Chaves-González, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 227-234. ISBN: 978-3-642-53855-1.
#9 "Hybrid Multiobjective Artificial Bee Colony with Differential Evolution Applied to Motif Finding", in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7833". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 68-79. ISBN: 978-3-642-37188-2.
#10 "Comparing Different Operators and Models to Improve a Multiobjective Artificial Bee Colony Algorithm for Inferring Phylogenies", in: "Theory and Practice of Natural Computing, LNCS, Vol. 7505". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 187-200. ISBN: 978-3-642-33859-5.
#11 "Comparing Multiobjective Artificial Bee Colony Adaptations for Discovering DNA Motifs", in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7246". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 110-121. ISBN: 978-3-642-29065-7.
#12 "Discovering DNA Motifs with a Parallel Shared Memory Differential Evolution", in: "Computer Aided Systems Theory, LNCS, Vol. 6927". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido and Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 232-239. ISBN: 978-3-642-27548-7.
#13 "Inferring Phylogenetic Trees Using a Multiobjective Artificial Bee Colony Algorithm", in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7246". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 144-155. ISBN: 978-3-642-29065-7.
#14 "A Parallel Niched Pareto Evolutionary Algorithm for Multiple Sequence Alignment", in: "International Conference on Practical Applications of Computational Biology & Bioinformatics, AISC, Vol. 93". Fernando J. Mateus da Silva, Juan M. Sánchez-Pérez, Juan A. Gómez-Pulido, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2011, pp. 157-165. ISBN: 978-3-642-19913-4.
#15 "Applying a Multiobjective Gravitational Search Algorithm (MO-GSA) to Discover Motifs", in: "Advances in Computational Intelligence. Lecture Notes in Computer Science, Vol. 6692". David L. Gónzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2011, pp. 372-379. ISBN: 978-3-642-21497-4.
#16 "Finding Motifs in DNA Sequences Applying a Multiobjective Artificial Bee Colony (MOABC) Algorithm", in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 6623". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2011, pp. 89-100. ISBN: 978-3-642-20388-6.
#17 "A Multiobjective Variable Neighborhood Search for Solving the Motif Discovery Problem", in: "Soft Computing Models in Industrial and Environmental Applications. Advances in Intelligent and Soft Computing, Vol. 73". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2010, pp. 39-46. ISBN: 978-3-642-13160-8.
#18 "Using a Parallel Team of Multiobjective Evolutionary Algorithms to Solve the Motif Discovery Problem", in: "Distributed Computing and Artificial Intelligence, AISC, Vol. 79". David L. Gonzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gomez-Pulido, Juan M. Sanchez-Perez. Springer-Verlag, Berlin Heidelberg, Germany, 2010, pp. 569-576. ISBN: 978-3-642-14882-8.
#19 "AlineaGA: a Genetic Algorithm for Multiple Sequence Alignment", in: "New Challenges in Applied Intelligence Technologies, SCI, Vol. 134". Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2008, pp. 309-318. ISBN: 978-3-540-79354-0.
#20 "Hardware Modelling of Cellular Automata: The Game of Life Case", in: "Computer Systems Aided Theory, LNCS, Vol. 4739". Juan A. Gómez-Pulido, Juan M. Matas Santiago, Francisco Pérez Rodríguez, Miguel A. Vega-Rodríguez, Juan M. Sánchez Pérez, Francisco Fernández de Vega. R. Moreno-Díaz et al. (Eds.), Springer-Verlag, Berlin Heidelberg, Germany, 2007, pp. 589-595. ISBN: 978-3-540-75866-2.

Books
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Editor of books and journals
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#1 "Special Issue on Algorithms for Computational Biology: Eighth Edition" (IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 20, Issue 3, May-June 2023). Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE Computer Society, Los Alamitos, CA, USA, 2023. ISSN: 1545-5963. (JCR impact factor = 4.5 in 2022)
#2 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 12715". Several authors. Carlos Martín-Vide, Miguel A. Vega-Rodríguez, Travis Wheeler (Eds). Springer, Switzerland, 2021. ISBN: 978-3-030-74431-1. ISSN: 0302-9743.
#3 "Special Issue on Algorithms for Computational Biology: Seventh Edition" (IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 18, Issue 6, November-December 2021). Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE Computer Society, Los Alamitos, CA, USA, 2021. ISSN: 1545-5963. (JCR impact factor = 3.702)
#4 "Special Issue on Algorithms for Computational Biology: Sixth Edition" (IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 18, Issue 1, January-February 2021). Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE Computer Society, Los Alamitos, CA, USA, 2021. ISSN: 1545-5963. (JCR impact factor = 3.702)
#5 "Special Issue on Algorithms for Computational Biology: Fifth Edition" (IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 17, Issue 1, January-February 2020). Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE Computer Society, Los Alamitos, CA, USA, 2020. ISSN: 1545-5963. (JCR impact factor = 3.710)
#6 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 11488". Several authors. Ian Holmes, Carlos Martín-Vide, Miguel A. Vega-Rodríguez (Eds). Springer, Switzerland, 2019. ISBN: 978-3-030-18173-4. ISSN: 0302-9743.
#7 "Special Issue from the Fourth International Conference on Algorithms for Computational Biology (AlCoB 2017)" (Journal of Computational Biology, Volume 26, Issue 9, September 2019). Carlos Martín-Vide, Miguel A. Vega-Rodríguez. Mary Ann Liebert, New Rochelle, NY, USA, 2019. ISSN: 1066-5277. (JCR impact factor = 1.054)
#8 "Special Issue on Algorithms for Computational Biology: Third Edition" (IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 16, Issue 3, May-June 2019). Carlos Martín-Vide, Miguel A. Vega-Rodríguez. IEEE Computer Society, Los Alamitos, CA, USA, 2019. ISSN: 1545-5963. (JCR impact factor = 3.015)
#9 "Special Issue on Parallel Computing in Bioinformatics" (Journal of Supercomputing, Volume 75, Issue 7, July 2019). Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Springer, Dordrecht, The Netherlands, 2019. ISSN: 0920-8542. (JCR impact factor = 2.469)
#10 "Special Issue on Parallel Programming in Bioinformatics" (International Journal of Parallel Programming, Volume 47, Issue 2, April 2019). Miguel A. Vega-Rodríguez, José M. Granado-Criado. Springer-Plenum Publishers, New York, NY, USA, 2019. ISSN: 0885-7458. (JCR impact factor = 1.244)
#11 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 10849". Several authors. Jesper Jansson, Carlos Martín-Vide, Miguel A. Vega-Rodríguez (Eds). Springer, Switzerland, 2018. ISBN: 978-3-319-91937-9. ISSN: 0302-9743.
#12 "Proceedings of the 6th International Workshop on Parallelism in Bioinformatics (PBio 2018)". Several authors. Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado-Criado, Rosa M. Badia (Eds). ACM, New York, USA, 2018. ISBN: 978-1-4503-6531-4.
#13 "Special Issue on Parallel Computing in Computational Biology" (Journal of Computational Biology, Volume 25, Issue 8, August 2018). Miguel A. Vega-Rodríguez, José M. Granado-Criado. Mary Ann Liebert, New Rochelle, NY, USA, 2018. ISSN: 1066-5277. (JCR impact factor = 0.879)
#14 "Special Issue on Parallelism in Computational Biology" (International Journal of High Performance Computing Applications, Volume 32, Issue 3, May 2018). Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. SAGE Publications, London, England, UK, 2018. ISSN: 1094-3420. (JCR impact factor = 1.956)
#15 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 10252". Several authors. Daniel Figueiredo, Carlos Martín-Vide, Diogo Pratas, Miguel A. Vega-Rodríguez (Eds). Springer, Switzerland, 2017. ISBN: 978-3-319-58162-0. ISSN: 0302-9743.
#16 "Special Issue on Parallelism-based Approaches in Computational Biology" (Cluster Computing-The Journal of Networks Software Tools and Applications, Volume 20, Issue 3, September 2017). Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Springer, New York, NY, USA, 2017. ISSN: 1386-7857. (JCR impact factor = 1.601)
#17 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 9702". Several authors. María Botón-Fernández, Carlos Martín-Vide, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez (Eds). Springer, Switzerland, 2016. ISBN: 978-3-319-38826-7. ISSN: 0302-9743.
#18 "Special Issue on Parallelism in Bioinformatics" (Parallel Computing, Volume 42, February 2015). Miguel A. Vega-Rodríguez, David L. González-Álvarez. Elsevier Science, Amsterdam, The Netherlands, 2015. ISSN: 0167-8191. (JCR impact factor = 1.000)
#19 "Special Issue on Parallelism-based Technologies in Bioinformatics and Biomedicine" (Concurrency and Computation: Practice and Experience, Volume 27, Issue 18, December 2015). Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Wiley-Blackwell, Malden, England, UK, 2015. ISSN: 1532-0626. (JCR impact factor = 0.942)
#20 "Special Section on Advanced Parallel Computing Systems to Accelerate Bioinformatics" (IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 12, Issue 5). Juan A. Gomez-Pulido, Bertil Schmidt, and Wu-chun Feng. IEEE Computer Society, Los Alamitos, CA, USA, 2015. ISSN: 1545-5963. (JCR impact factor = 1.609)

Conferences: Communications
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#1 "Metaheurística Paralela Multinivel para Inferencia Filogenética en Sistemas Heterogéneos". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Avances en Arquitectura y Tecnología de Computadores. Actas de las Jornadas SARTECO 2022, Arturo Gonzalez-Escribano et al. (editores), Sociedad Española de Arquitectura y Tecnología de Computadores (SARTECO), Alicante, Spain, 2022, pp. 171-178. ISBN: 978-84-1302-185-0.
#2 "Paralelización Asíncrona de Algoritmo Multiobjetivo para la Codificación de Proteínas". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Avances en Arquitectura y Tecnología de Computadores. Actas de las Jornadas SARTECO 2022, Arturo Gonzalez-Escribano et al. (editores), Sociedad Española de Arquitectura y Tecnología de Computadores (SARTECO), Alicante, Spain, 2022, pp. 33-41. ISBN: 978-84-1302-185-0.
#3 "PhageCocktail: Dos Apps y Cinco Algoritmos para el Diseño de Cócteles de Fagos". Felipe Molina, Manuel Menor-Flores, María Victoria Díaz-Galián, Miguel A. Vega-Rodríguez, Lucía Fernández, Pilar García. Red Española de Bacteriófagos y Elementos Transductores (FAGOMA 2022), Pilar García, Felipe Molina (editores), Red FAGOMA, Trujillo, Spain, 2022, pp. 9-9.
#4 "Cooperación Inter-algorítmica Multiobjetivo para Reconstrucción Filogenética". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Actas del XIV Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 20/21), parte de CAEPIA 20/21, Enrique Alba et al. (editores), Asociación Española para la Inteligencia Artificial (AEPIA), Málaga, Spain, 2021, pp. 440-445. ISBN: 978-84-09-30514-8.
#5 "De Kepler a Turing: Evaluando Arquitecturas GPU para Acelerar el Algoritmo de Fitch". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Antonio Zahinos-Márquez, Leonel Sousa. Avances en Arquitectura y Tecnología de Computadores. Actas de las Jornadas SARTECO 20/21, Denisa-Andreea Constantinescu et al. (editores), Sociedad Española de Arquitectura y Tecnología de Computadores (SARTECO), Málaga, Spain, 2021, pp. 5-12. ISBN: 978-84-09-32487-3.
#6 "Diseñando Múltiples Genes para una Proteína mediante el Algoritmo Memético SFLA". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Actas de la XIX Conferencia de la Asociación Española para la Inteligencia Artificial (CAEPIA 20/21), Enrique Alba et al. (editores), Asociación Española para la Inteligencia Artificial (AEPIA), Málaga, Spain, 2021, pp. 160-165. ISBN: 978-84-09-30514-8.
#7 "Optimización Multiobjetivo basada en el Algoritmo ABC para la Codificación de Proteínas". Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Actas del XIV Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 20/21), parte de CAEPIA 20/21, Enrique Alba et al. (editores), Asociación Española para la Inteligencia Artificial (AEPIA), Málaga, Spain, 2021, pp. 478-483. ISBN: 978-84-09-30514-8.
#8 "Análisis Comparativo de Tecnologías GPGPU para Acelerar Funciones Objetivo: Parsimonia como Caso de Estudio". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Jorge Vicente-Viola, Leonel Sousa. Avances en Arquitectura y Tecnología de Computadores. Actas de las Jornadas SARTECO 2019, Servicio de Publicaciones, Universidad de Extremadura, Cáceres, Spain, 2019, pp. 21-28. ISBN: 978-84-09-12127-4.
#9 "Taxonomía de Algoritmos Evolutivos Multiobjetivo Paralelos: Una Visión Intra-Algorítmica". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Avances en Arquitectura y Tecnología de Computadores. Actas de las Jornadas SARTECO 2019, Servicio de Publicaciones, Universidad de Extremadura, Cáceres, Spain, 2019, pp. 12-20. ISBN: 978-84-09-12127-4.
#10 "Algoritmo Multi-objetivo de Murciélagos para Reconstrucción Filogenética en Procesadores Multicore". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Actas de las XXIX Jornadas de Paralelismo (JP 2018), Universidad de Zaragoza, Teruel, Spain, 2018, pp. 35-41. ISBN: 978-84-09-04334-7.
#11 "Análisis de Diseños Paralelos Multiobjetivo y Políticas de Planificación en Biología Evolutiva". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Actas del XIII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2018), parte de CAEPIA 2018, Universidad de Granada, Granada, Spain, 2018, pp. 687-692. ISBN: 978-84-09-05643-9.
#12 "Analysis of Scheduling Policies in Metaheuristics for Evolutionary Biology". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Proceedings of the 6th International Workshop on Parallelism in Bioinformatics (PBio 2018), part of EuroMPI 2018, Association for Computing Machinery (ACM), Barcelona, Spain, 2018, pp. 3-10. ISBN: 978-1-4503-6531-4.
#13 "Phylogenetic Reconstructions Using an Indicator-Based Bat Algorithm for Multicore Processors". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Proceedings of the 2018 IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2018), IEEE Computer Society, Madrid, Spain, 2018, pp. 753-756. ISBN: 978-1-5386-5487-3.
#14 "Computación Heterogénea CPU+GPU Aplicada a los Cálculos de Parsimonia Filogenética". Sergio Santander-Jiménez, Aleksandar Ilic, Leonel Sousa, Miguel A. Vega-Rodríguez. Actas de las XXVIII Jornadas de Paralelismo (JP 2017), Universidad de Malaga, Malaga, Spain, 2017, pp. 75-81. ISBN: 978-84-697-4835-0.
#15 "Integrando Paralelismo en la Metaheurística Indicator-Based Multiobjective Bat Algorithm para Reconstrucción Filogenética". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del XII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2017), Universitat Pompeu Fabra, Barcelona, Spain, 2017, pp. 824-833. ISBN: 978-84-697-4275-1.
#16 "Inteligencia Colectiva de Abejas Multiobjetivo para Alinear Múltiples Secuencias Biológicas". Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez. Actas del XII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2017), Universitat Pompeu Fabra, Barcelona, Spain, 2017, pp. 834-843. ISBN: 978-84-697-4275-1.
#17 "Optimización Multiobjetivo para el Estudio de Asociaciones Genéticas". Daniel Gallego-Sánchez, Álvaro Rubio-Largo, José M. Granado-Criado, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Actas del XII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2017), Universitat Pompeu Fabra, Barcelona, Spain, 2017, pp. 844-853. ISBN: 978-84-697-4275-1.
#18 "Optimización Multiobjetivo Paralela para la Detección de Epistasia de Múltiples Loci". Daniel Gallego-Sánchez, José M. Granado-Criado, Sergio Santander-Jiménez, Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez. Actas de las XXVIII Jornadas de Paralelismo (JP 2017), Universidad de Malaga, Malaga, Spain, 2017, pp. 83-88. ISBN: 978-84-697-4835-0.
#19 "Aplicación de Metaheurísticas Multiobjetivo Basadas en Dominancia e Indicadores para Reconstrucción Filogenética". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del XI Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2016), Ediciones Universidad de Salamanca, Salamanca, Spain, 2016, pp. 461-470. ISBN: 978-84-9012-632-5.
#20 "Metaheurística Multiobjetivo Híbrida para el Alineamiento Múltiple de Secuencias". Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Actas del XI Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2016), Ediciones Universidad de Salamanca, Salamanca, Spain, 2016, pp. 315-324. ISBN: 978-84-9012-632-5.
#21 "Una Adaptación Paralela Basada en Epsilon-Dominancia del Algoritmo de las Luciérnagas para la Inferencia de Filogenias Multiobjetivo". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas de las XXVII Jornadas de Paralelismo (JP 2016), Ediciones Universidad de Salamanca, Salamanca, Spain, 2016, pp. 17-23. ISBN: 978-84-9012-626-4.
#22 "Análisis Comparativo de Implementaciones del Algoritmo Multiobjective Artificial Bee Colony para Reconstrucción Filogenética". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del X Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, Universidad de Extremadura, Mérida, Spain, 2015, pp. 369-376. ISBN: 978-84-697-2150-6.
#23 "Lossless coding analisys of medical images sequences based on HEVC". Paulo J. Cordeiro, Juan A. Gomez-Pulido, Pedro A. Asuncao. Proceedings of the Congress on Numerical Methods in Engineering (CMN 2015), Instituto Superior Técnico, Lisboa (Portugal), 2015, pp. -.
#24 "Metaheurística Multiobjetivo Paralela para el Alineamiento Múltiple de Secuencias". Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. Actas de las XXVI Jornadas de Paralelismo (JP 2015), Universidad de Córdoba, Córdoba, Spain, 2015, pp. 31-37. ISBN: 978-84-16017-52-2.
#25 "Paralelizando una Evolución Diferencial Multiobjetivo Híbrida para Identificar Elementos cis-Reguladores". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Actas de las XXVI Jornadas de Paralelismo (JP 2015), Universidad de Córdoba, Córdoba, Spain, 2015, pp. 8-13. ISBN: 978-84-16017-52-2.
#26 "Parallel H4MSA for Multiple Sequence Alignment". Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. Proceedings of the 13th IEEE International Symposium on Parallel and Distributed Processing with Applications, IEEE Computer Society, Helsinki, Finland, 2015, pp. 242-247. ISBN: 978-1-4673-7951-9.
#27 "Usando GPUs para Acelerar Reconstrucciones Filogenéticas bajo el Criterio de Parsimonia". Sergio Santander-Jiménez, Aleksandar Ilic, Leonel Sousa, Miguel A. Vega-Rodríguez. Actas de las XXVI Jornadas de Paralelismo (JP 2015), Universidad de Córdoba, Córdoba, Spain, 2015, pp. 38-44. ISBN: 978-84-16017-52-2.
#28 "Acelerador FPGA para el cálculo de la calidad de biclústers en Bioinformática". Juan A. Gómez Pulido, Sebastián Trinidad Amado, Ramón A. Fernández Díaz. Actas de las XIV Jornadas de Computación Reconfigurable y Aplicaciones (JCRA 2014), Sergio Cuenca Asensi (ed.). Sociedad de Arquitectura de Computadores (SARTECO), Valladolid, España, 2014, pp. 99-105. ISBN: 978-84-697-0971-9.
#29 "Applying OpenMP-based Parallel Implementations of NSGA-II and SPEA2 to Study Phylogenetic Relationships". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the IEEE International Conference on Cluster Computing (IEEE Cluster 2014), IEEE Computer Society, Madrid, Spain, 2014, pp. 305-313. ISBN: 978-1-4799-5547-3.
#30 "Estudiando Relaciones Filogenéticas Mediante Metaheurísticas Multiobjetivo Paralelas Basadas en OpenMP". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas de las XXV Jornadas de Paralelismo (JP 2014), Universidad de Valladolid, Valladolid, Spain, 2014, pp. 173-178. ISBN: 978-84-697-0329-3.
#31 "Performance Analysis of Multiobjective Artificial Bee Colony Implementations for Phylogenetic Reconstruction". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the Sixth World Congress on Nature and Biologically Inspired Computing, IEEE Computer Society, Porto, Portugal, 2014, pp. 35-40. ISBN: 978-1-4799-5937-2.
#32 "A Comparative Study on Distance Methods Applied to a Multiobjective Firefly Algorithm for Phylogenetic Inference". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the Genetic and Evolutionary Computation Conference Companion (GECCO 2013), Association for Computing Machinery (ACM), Amsterdam, The Netherlands, 2013, pp. 1587-1594. ISBN: 978-1-4503-1964-5.
#33 "An SPEA2 Based Approach for Reliable DNA Base-code Generation". José M. Chaves-González, Miguel A. Vega-Rodríguez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2013, pp. 170-172. ISBN: 978-84-695-6971-9.
#34 "Designing a Novel Hybrid Swarm Based Multiobjective Evolutionary Algorithm for Finding DNA Motifs". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Proceedings of the Genetic and Evolutionary Computation Conference Companion (GECCO 2013), Association for Computing Machinery (ACM), Amsterdam, The Netherlands, 2013, pp. 1571-1578. ISBN: 978-1-4503-1964-5.
#35 "Detecting Over-Represented Motifs by Using Multiobjective Shuffle Frog Leaping Algorithm". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2013, pp. 173-175. ISBN: 978-84-695-6971-9.
#36 "DNA Base-code Generation for Reliable Computing by Using Standard Multi-objective Evolutionary Algorithms". Jose M. Chaves-González, Miguel A. Vega-Rodríguez. Proceedings of the Genetic and Evolutionary Computation Conference Companion (GECCO 2013), Association for Computing Machinery (ACM), Amsterdam, The Netherlands, 2013, pp. 1617-1624. ISBN: 978-1-4503-1964-5.
#37 "Paralelizando una Aproximación Multiobjetivo y Bioinspirada para Filogenética Usando Esquemas Híbridos MPI/OpenMP". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas de las XXIV Jornadas de Paralelismo (JP 2013), Servicio de Publicaciones. Universidad Complutense de Madrid, Madrid, Spain, 2013, pp. 253-258. ISBN: 978-84-695-8330-2.
#38 "Parallelizing a Hybrid Multiobjective Differential Evolution for Identifying Cis-Regulatory Elements". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Proceedings of the 20th EuroMPI 2013, Association for Computing Machinery (ACM), Madrid, Spain, 2013, pp. 223-228. ISBN: 978-84-616-5133-7.
#39 "Parallelizing a Multiobjective Swarm Intelligence Approach to Phylogenetics Using Hybrid MPI/OpenMP Schemes". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the 20th EuroMPI 2013, Association for Computing Machinery (ACM), Madrid, Spain, 2013, pp. 193-198. ISBN: 978-84-616-5133-7.
#40 "Una Aproximación Multiobjetivo Basada en el Comportamiento de las Luciérnagas para la Inferencia Filogenética". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del IX Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. M. Colmenar et al. (editores), Universidad Complutense de Madrid y Universidad Rey Juan Carlos, Madrid, Spain, 2013, pp. 614-623. ISBN: 978-84-695-8348-7.
#41 "Using OpenMP to Parallelize a Multiobjective Firefly Algorithm for Phylogenetic Inference". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2013, pp. 239-241. ISBN: 978-84-695-6971-9.
#42 "A Parallel Multi-Core Team of Multiobjective Evolutionary Algorithms to Discover DNA Motifs". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. 14th IEEE International Conference on High Performance Computing and Communications , IEEE Computer Society, Liverpool, UK, 2012, pp. 17-24. ISBN: 978-0-7695-4749-7.
#43 "Algoritmos Multiobjetivo Basados en Inteligencia Colectiva para Resolver el Problema del Descubrimiento de Motifs". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas del VIII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. A. Gámez, J. M. Puerta, F. Parreño y L. de la Ossa (editores), Universidad de Castilla-La Mancha, Albacete, Spain, 2012, pp. 329-336. ISBN: 978-84-615-6931-1.
#44 "DNA Sequence Design for Reliable DNA Computing by Using a Multiobjective Approach". Jose M. Chaves-González, Miguel A. Vega-Rodríguez. 13th IEEE International Symposium on Computational Intelligence and Informatics, IEEE Computer Society, Budapest, Hungary, 2012, pp. 73-78. ISBN: 978-1-4673-5206-2.
#45 "Evaluando el Rendimiento Multicore de una Aproximación Multiobjetivo de Inteligencia de Enjambre para la Inferencia Filogenética". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXIII Jornadas de Paralelismo (JP 2012), Servicio de Publicaciones. Universidad Miguel Hernández, Elche, Spain, 2012, pp. 98-103. ISBN: 978-84-695-4471-6.
#46 "Evaluating the Performance of a Parallel Multiobjective Artificial Bee Colony Algorithm for Inferring Phylogenies on Multicore Architectures". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. 10th IEEE International Symposium on Parallel and Distributed Processing with Applications, IEEE Computer Society, Madrid, Spain, 2012, pp. 713-720. ISBN: 978-0-7695-4701-5.
#47 "Multiobjective Teaching-Learning-Based Optimization (MO-TLBO) for Motif Finding". David L. González-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. 13th IEEE International Symposium on Computational Intelligence and Informatics, IEEE Computer Society, Budapest, Hungary, 2012, pp. 141-146. ISBN: 978-1-4673-5206-2.
#48 "Prediciendo Motifs en Secuencias de ADN Aplicando Búsqueda de Entornos Variables Multiobjetivo". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas del VIII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. A. Gámez, J. M. Puerta, F. Parreño y L. de la Ossa (editores), Universidad de Castilla-La Mancha, Albacete, Spain, 2012, pp. 125-132. ISBN: 978-84-615-6931-1.
#49 "Un Equipo Paralelo Multi-Núcleo para Descubrir Motifs en Secuencias de ADN". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXIII Jornadas de Paralelismo (JP 2012), Servicio de Publicaciones. Universidad Miguel Hernández, Elche, Spain, 2012, pp. 129-134. ISBN: 978-84-695-4471-6.
#50 "Un Sistema Híbrido MPI/OpenMP basado en el Algoritmo NSGA-II para la Inferencia de Árboles Filogenéticos". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXIII Jornadas de Paralelismo (JP 2012), Servicio de Publicaciones. Universidad Miguel Hernández, Elche, Spain, 2012, pp. 122-127. ISBN: 978-84-695-4471-6.
#51 "Una Adaptación Multiobjetivo y Paralela del Algoritmo Artificial Bee Colony Aplicada a la Inferencia Filogenética". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas del VIII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. A. Gámez, J. M. Puerta, F. Parreño y L. de la Ossa (editores), Universidad de Castilla-La Mancha, Albacete, Spain, 2012, pp. 375-382. ISBN: 978-84-615-6931-1.
#52 "A Parallel Differential Evolution to Solve the Motif Discovery Problem by Using OpenMP". David L. Gónzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2011, pp. 239-241. ISBN: 978-84-693-9560-8.
#53 "Comparación de Algoritmos Evolutivos Paralelos y Secuenciales para el Alineamiento Múltiple de Secuencias". Fernando José Mateus Silva, Juan Manuel Sánchez-Pérez, Juan Antonio Gómez-Pulido and Miguel A. Vega-Rodríguez. Actas de las XXII Jornadas de Paralelismo (JP2011), Servicio de Publicaciones. Universidad de La Laguna, La Laguna, Tenerife, España, 2011, pp. 9-14. ISBN: 978-84-694-1791-1.
#54 "Una Versión Paralela de la Evolución Diferencial para Predecir Motifs en Cadenas de ADN". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXII Jornadas de Paralelismo (JP2011), Servicio de Publicaciones. Universidad de La Laguna, La Laguna, Tenerife, España, 2011, pp. 3-8. ISBN: 978-84-694-1791-1.
#55 "A Niched Pareto Genetic Algorithm For Multiple Sequence Alignment Optimization". Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Proceedings of the International Conference on Agents and Artificial Intelligence (ICAART 2010), Institute for Systems and Technologies of Information, Control and Communication (INSTICC), Valencia, Spain, 2010, pp. 323-329. ISBN: 978-989-674-021-4.
#56 "An Evolutionary Approach for Performing Multiple Sequence Alignment". Fernando J. Mateus-Silva, Juan M. Sánchez-Pérez, Juan A. Gómez-Pulido, Miguel A. Vega-Rodríguez. Proceedings of the 2010 IEEE Congress on Evolutionary Computation (CEC 2010), IEEE Computer Society, Barcelona, Spain, 2010, pp. 992-998. ISBN: 978-1-4244-6910-9.
#57 "Parallel AlineaGA: An Island Parallel Evolutionary Algorithm for Multiple Sequence Alignment". Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Proceedings of the International Conference on Soft Computing and Pattern Recognition (SoCPaR 2010), IEEE Computer Society, Paris, France, 2010, pp. 279-284. ISBN: 978-1-4244-7896-5.
#58 "Resolviendo el Problema del Descubrimiento de Motifs Mediante Evolución Diferencial con Torneos de Pareto". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido y Juan M. Sánchez-Pérez. Actas de MAEB 2010. VII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, Ibergarceta Publicaciones S.L., Valencia, España, 2010, pp. 11-18. ISBN: 978-84-92812-58-5.
#59 "Solving the Motif Discovery Problem by Using Differential Evolution with Pareto Tournaments". David L. Gonzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gomez-Pulido, Juan M. Sanchez-Perez. Proceedings of the 2010 IEEE Congress on Evolutionary Computation (CEC 2010), IEEE Computer Society, Barcelona, Spain, 2010, pp. 4140-4147. ISBN: 978-1-4244-6910-9.
#60 "Un Equipo Paralelo de Algoritmos Evolutivos Multiobjetivo para Resolver el Problema del Descubrimiento de Motifs". David L. González Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez Pulido, Juan M. Sánchez Pérez. Actas de las XXI Jornadas de Paralelismo, Ibergarceta Publicaciones S.L., Valencia, España, 2010, pp. 35-42. ISBN: 978-84-92812-49-3.
#61 "Optimizing Multiple Sequence Alignment by Improving Mutation Operators of a Genetic Algorithm". Fernando J. Mateus da Silva , Juan M. Sánchez-Pérez, Juan A. Gómez-Pulido, Miguel A. Vega-Rodríguez. Proceedings of the 9th International Conference on Intelligent Systems Design and Applications, IEEE Computer Society, Pisa, Italy, 2009, pp. 1257-1262. ISBN: 978-0-7695-3872-3.
#62 "Un Algoritmo Genético para Alineamiento Múltiple de Secuencias". Fernando J. Mateus da Silva, Juan M. Sánchez-Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. Actas del VI Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 09), E. Alba, F. Chicano, F. Luna, G. Luque, Universidad de Málaga, Málaga, España, 2009, pp. 525-532. ISBN: 978-84-691-6813-4.
#63 "Alineamiento Múltiple de Secuencias utilizando Algoritmos Genéticos: Revisión". Fernando Silva, Juan M. Sánchez Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. Actas de las I Jornadas sobre Algoritmos Evolutivos y Metaheurísticas (JAEM07), Thomson, Zaragoza, España, 2007, pp. 41-48. ISBN: 978-84-9732-614-8.
#64 "Sistema Web de Auto-Evaluación en Patología Infecciosa". Juan A. Gómez-Pulido, Juan M. Alonso-Rodríguez, Juan M. Sánchez-Pérez, Miguel A. Vega-Rodríguez. Informática Educativa: Nuevos Retos, Servicio de Publicaciones, Universidad de Extremadura, Caceres, Spain, 2004, pp. 1-5. ISBN: 84-7723-653-4.
#65 "Combination of AI Tools and Multimodeling for Real-Time Supervision of a Bioprocess". J.M. Girón Sierra, J.A. Gómez Pulido and B. Andrés-Toro. Proceedings First Join Conference of International Simulation Societies, The Society for Computer Simulation, Zurich, Switzerland, 1994, pp. 151-156. ISBN: 1-56555-031-5.
#66 "Simulation Based Real-Time Monitoring of an Experimental Bioprocess Using an Expert System Shell". José M. Girón Sierra, Juan A. Gómez Pulido and Bonifacio Andrés-Toro. Proceedings IASTED Conference on Modelling and Simulation '94, IASTED, Pittsburgh. Pennsylvania, USA, 1994, pp. -.

Conferences: Posters
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#1 "Comparison of Heuristic Algorithms and Exhaustive Design of Phage Cocktails from Host Range Matrices". Manuel Menor-Flores, María Victoria Díaz-Galián, Miguel A. Vega-Rodríguez, Felipe Molina. Viruses of Microbes 2022 International Conference (VoM 2022), Joana Azeredo, Madalena Pimentel (editors), University of Minho and University of Lisbon, Guimarães, Portugal, 2022, pp. 1-1.
#2 "Multiple Sequence Alignments Using Genetic Algorithms: a Review". Fernando Silva, Juan M. Sánchez Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE2007), , Boston, Massachusetts, USA, 2007, pp. 1-8.

Other publications
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Total: 185 publications, JCR-indexed journal papers: 76 (47 Q1, 17 Q2, 11 Q3, 1 Q4)