Scientific production of: Bioinformatics


Journal papers
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#1 "Multi-Objective Artificial Bee Colony for Designing Multiple Genes Encoding the Same Protein" Belen Gonzalez-Sanchez, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado-Criado. Applied Soft Computing, Volume 74, Elsevier Science, Amsterdam, The Netherlands, 2019, pp. 90-98, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2018.10.023. (Impact factor = 3.907 in 2017)
#2 "A Characteristic-based Framework for Multiple Sequence Aligners" Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. IEEE Transactions on Cybernetics, Volume 48, Issue 1, IEEE, Piscataway, NJ, USA, 2018, pp. 41-51, ISSN: 2168-2267. DOI: 10.1109/TCYB.2016.2621129. (Impact factor = 8.803 in 2017)
#3 "A Parallel Multiobjective Metaheuristic for Multiple Sequence Alignment" Álvaro Rubio-Largo, Mauro Castelli, Leonardo Vanneschi, Miguel A. Vega-Rodríguez. Journal of Computational Biology, Volume 25, Issue 9, Mary Ann Liebert, New Rochelle, NY, USA, 2018, pp. 1009-1022, ISSN: 1066-5277. DOI: 10.1089/cmb.2018.0031. (Impact factor = 1.191 in 2017)
#4 "Comparative Analysis of Intra-Algorithm Parallel Multiobjective Evolutionary Algorithms: Taxonomy Implications on Bioinformatics Scenarios" Sergio Santander-Jiménez, Miguel A. Vega-Rodriguez. IEEE Transactions on Parallel and Distributed Systems, IEEE Computer Society, Los Alamitos, CA, USA, 2018, pp. 1-15, ISSN: 1045-9219. DOI: 10.1109/TPDS.2018.2854788. (Impact factor = 3.971 in 2017)
#5 "Multiobjective Characteristic-based Framework for Very-Large Multiple Sequence Alignment" Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Applied Soft Computing, Volume 69, Elsevier Science, Amsterdam, The Netherlands, 2018, pp. 719-736, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2017.06.022. (Impact factor = 3.907 in 2017)
#6 "Multiobjective Frog-Leaping Optimization for the Study of Ancestral Relationships in Protein Data" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. IEEE Transactions on Evolutionary Computation, IEEE, Piscataway, NJ, USA, 2018, pp. 1-14, ISSN: 1089-778X. DOI: 10.1109/TEVC.2017.2774599. (Impact factor = 8.124 in 2017)
#7 "Multiobjective Metaheuristic to Design RNA Sequences" Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. IEEE Transactions on Evolutionary Computation, IEEE, Piscataway, NJ, USA, 2018, pp. 1-14, ISSN: 1089-778X. DOI: 10.1109/TEVC.2018.2844116. (Impact factor = 8.124 in 2017)
#8 "Parallel Computing in Computational Biology: A Technological Point of View" Miguel A. Vega-Rodríguez, José M. Granado-Criado. Journal of Computational Biology, Volume 25, Issue 8, Mary Ann Liebert, New Rochelle, NY, USA, 2018, pp. 837-840, ISSN: 1066-5277. DOI: 10.1089/cmb.2018.29018.mavr. (Impact factor = 1.191 in 2017)
#9 "Parallel Programming in Bioinformatics: Some Interesting Approaches" Miguel A. Vega-Rodríguez, José M. Granado-Criado. International Journal of Parallel Programming, Springer, New York, NY, USA, 2018, pp. 1-3, ISSN: 0885-7458. DOI: 10.1007/s10766-018-0605-7. (Impact factor = 0.897 in 2017)
#10 "Parallelism in Computational Biology: A View from Diverse High-Performance Computing Applications" Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. International Journal of High Performance Computing Applications, Volume 32, Issue 3, SAGE Publications, London, England, UK, 2018, pp. 317-320, ISSN: 1094-3420. DOI: 10.1177/1094342016677599. (Impact factor = 2.015 in 2017)
#11 "Searching for Common Patterns on Protein Sequences by means of a Parallel Hybrid Honey-Bee Mating Optimization Algorithm" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Parallel Computing, Volume 76, Elsevier Science, Amsterdam, The Netherlands, 2018, pp. 1-17, ISSN: 0167-8191. DOI: 10.1016/j.parco.2018.04.001. (Impact factor = 0.938 in 2017)
#12 "Swarm Intelligence for Optimizing the Parameters of Multiple Sequence Aligners" Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Swarm and Evolutionary Computation, Volume 42, Elsevier Science, Amsterdam, The Netherlands, 2018, pp. 16-28, ISSN: 2210-6502. DOI: 10.1016/j.swevo.2018.04.003. (Impact factor = 3.818 in 2017)
#13 "A Hybrid MPI/OpenMP Parallel Implementation of NSGA-II for Finding Patterns in Protein Sequences" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Journal of Supercomputing, Volume 73, Issue 6, Springer, Dordrecht, The Netherlands, 2017, pp. 2285-2312, ISSN: 0920-8542. DOI: 10.1007/s11227-016-1916-3. (Impact factor = 1.532)
#14 "Accelerating the Phylogenetic Parsimony Function on Heterogeneous Systems" Sergio Santander-Jiménez, Aleksandar Ilic, Leonel Sousa, Miguel A. Vega-Rodríguez. Concurrency and Computation: Practice and Experience, Volume 29, Issue 8, e4046, Wiley-Blackwell, Hoboken, NJ, England, 2017, pp. 1-15, ISSN: 1532-0626. DOI: 10.1002/cpe.4046. (Impact factor = 1.114)
#15 "Asynchronous Non-Generational Model to Parallelize Metaheuristics: A Bioinformatics Case Study" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. IEEE Transactions on Parallel and Distributed Systems, Volume 28, Issue 7, IEEE Computer Society, Los Alamitos, CA, USA, 2017, pp. 1825-1838, ISSN: 1045-9219. DOI: 10.1109/TPDS.2016.2645764. (Impact factor = 3.971)
#16 "Parallelism-based Approaches in Computational Biology: A View from Diverse Case Studies" Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Cluster Computing-The Journal of Networks Software Tools and Applications, Volume 20, Issue 3, Springer, New York, NY, USA, 2017, pp. 1865-1867, ISSN: 1386-7857. DOI: 10.1007/s10586-017-1037-7. (Impact factor = 1.601)
#17 "Reducing Alignment Time Complexity of Ultra-large Sets of Sequences" Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Journal of Computational Biology, Volume 24, Issue 11, Mary Ann Liebert, New Rochelle, NY, USA, 2017, pp. 1144-1152, ISSN: 1066-5277. DOI: 10.1089/cmb.2017.0097. (Impact factor = 1.191)
#18 "Using Biological Knowledge for Multiple Sequence Aligner Decision Making" Álvaro Rubio-Largo, Leonardo Vanneschi, Mauro Castelli, Miguel A. Vega-Rodríguez. Information Sciences, Volume 420, Elsevier Science, New York, NY, USA, 2017, pp. 278-298, ISSN: 0020-0255. DOI: 10.1016/j.ins.2017.08.069. (Impact factor = 4.305)
#19 "Using Mixed Mode Programming to Parallelize an Indicator-Based Evolutionary Algorithm for Inferring Multiobjective Phylogenetic Histories" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Soft Computing, Volume 21, Issue 19, Springer, New York, USA, 2017, pp. 5601-5620, ISSN: 1432-7643. DOI: 10.1007/s00500-016-2219-6. (Impact factor = 2.367)
#20 "A Comparative Study of Different Motif Occurrence Models applied to a Hybrid Multiobjective Shuffle Frog Leaping Algorithm" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Computer Journal, Volume 59, Issue 3, Oxford University Press, Oxford, England, 2016, pp. 384-402, ISSN: 0010-4620. DOI: 10.1093/comjnl/bxv055. (Impact factor = 0.711)
#21 "A Hybrid Multiobjective Memetic Metaheuristic for Multiple Sequence Alignment" Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. IEEE Transactions on Evolutionary Computation, Volume 20, Issue 4, IEEE, Piscataway, NJ, USA, 2016, pp. 499-514, ISSN: 1089-778X. DOI: 10.1109/TEVC.2015.2469546. (Impact factor = 10.629)
#22 "Fine-grained parallelization of fitness functions in bioinformatics optimization problems: gene selection for cancer classification and biclustering of gene expression data" Juan A. Gomez-Pulido, Jose L. Cerrada-Barrios, Sebastian Trinidad-Amado, Jose M. Lanza-Gutierrez, Ramon A. Fernandez-Diaz, Broderick Crawford and Ricardo Soto. BMC Bioinformatics, Vol. 17, Num. 1, BioMed Central, London, United Kingdom, 2016, 2016, pp. 1-13, ISSN: 1471-2105. DOI: 10.1186/s12859-016-1200-9. (Impact factor = 2.448)
#23 "Hybrid Multiobjective Artificial Bee Colony for Multiple Sequence Alignment" Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. Applied Soft Computing, Volume 41, Elsevier Science, Amsterdam, The Netherlands, 2016, pp. 157-168, ISSN: 1568-4946. DOI: 10.1016/j.asoc.2015.12.034. (Impact factor = 3.541)
#24 "Performance Evaluation of Dominance-Based and Indicator-Based Multiobjective Approaches for Phylogenetic Inference" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Information Sciences, Volume 330, Elsevier Science, New York, NY, USA, 2016, pp. 293-314, ISSN: 0020-0255. DOI: 10.1016/j.ins.2015.10.021. (Impact factor = 4.832)
#25 "A Hybrid Approach to Parallelize a Fast Non-Dominated Sorting Genetic Algorithm for Phylogenetic Inference" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Concurrency and Computation: Practice and Experience, Volume 27, Issue 3, Wiley-Blackwell, Malden, England, 2015, pp. 702-734, ISSN: 1532-0626. DOI: 10.1002/cpe.3269. (Impact factor = 0.942)
#26 "Accelerating Bioinformatics Applications via Emerging Parallel Computing Systems" Juan A. Gomez-Pulido, Bertil Schmidt, and Wu-chun Feng. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 12, Issue 5, IEEE Computer Society, Los Alamitos, CA, USA, 2015, pp. 971-972, ISSN: 1545-5963. DOI: 10.1109/TCBB.2015.2457736. (Impact factor = 1.609)
#27 "Finding Patterns in Protein Sequences by Using a Hybrid Multiobjective Teaching Learning Based Optimization Algorithm" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 12, Issue 3, IEEE Computer Society, Los Alamitos, CA, USA, 2015, pp. 656-666, ISSN: 1545-5963. DOI: 10.1109/TCBB.2014.2369043. (Impact factor = 1.609)
#28 "Multiobjective Optimization Algorithms for Motif Discovery in DNA Sequences" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Genetic Programming and Evolvable Machines, Volume 16, Issue 2, Springer, New York, NY, USA, 2015, pp. 167-209, ISSN: 1389-2576. DOI: 10.1007/s10710-014-9232-2. (Impact factor = 1.143)
#29 "On the Design of Shared Memory Approaches to Parallelize a Multiobjective Bee-Inspired Proposal for Phylogenetic Reconstruction" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Information Sciences, Volume 324, Elsevier Science, New York, NY, USA, 2015, pp. 163-185, ISSN: 0020-0255. DOI: 10.1016/j.ins.2015.06.040. (Impact factor = 3.364)
#30 "Parallel Multiobjective Metaheuristics for Inferring Phylogenies on Multicore Clusters" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. IEEE Transactions on Parallel and Distributed Systems, Volume 26, Issue 6, IEEE Computer Society, Los Alamitos, CA, USA, 2015, pp. 1678-1692, ISSN: 1045-9219. DOI: 10.1109/TPDS.2014.2325828. (Impact factor = 2.661)
#31 "Parallelism in Bioinformatics: A View from Different Parallelism-based Technologies" Miguel A. Vega-Rodríguez, David L. González-Álvarez. Parallel Computing, Volume 42, Elsevier Science, Amsterdam, The Netherlands, 2015, pp. 1-3, ISSN: 0167-8191. DOI: 10.1016/j.parco.2015.02.001. (Impact factor = 1.000)
#32 "Parallelism-based Technologies in Bioinformatics and Biomedicine: A View from Diverse Perspectives" Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Concurrency and Computation: Practice and Experience, Volume 27, Issue 18, Wiley-Blackwell, Malden, England, 2015, pp. 5473-5475, ISSN: 1532-0626. DOI: 10.1002/cpe.3596. (Impact factor = 0.942)
#33 "A Multiobjective Approach Based on the Behaviour of Fireflies to Generate Reliable DNA Sequences for Molecular Computing" Jose M. Chaves-González, Miguel A. Vega-Rodríguez. Applied Mathematics and Computation, Volume 227, Elsevier Science, New York, USA, 2014, pp. 291-308, ISSN: 0096-3003. DOI: 10.1016/j.amc.2013.11.032. (Impact factor = 1.551)
#34 "Convergence Analysis of some Multiobjective Evolutionary Algorithms when Discovering Motifs" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Soft Computing, Volume 18, Issue 5, Springer, New York, USA, 2014, pp. 853-869, ISSN: 1432-7643. DOI: 10.1007/s00500-013-1103-x. (Impact factor = 1.271)
#35 "DNA Strand Generation for DNA Computing by Using a Multi-Objective Differential Evolution Algorithm" José M. Chaves-González, Miguel A. Vega-Rodríguez. BioSystems, Volume 116, Elsevier Science, Oxford, England, 2014, pp. 49-64, ISSN: 0303-2647. DOI: 10.1016/j.biosystems.2013.12.005. (Impact factor = 1.548)
#36 "Gene Variants and Haplotypes Modifying Transcription Factor Binding Sites in the Human Cyclooxygenase 1 and 2 (PTGS1 and PTGS2) Genes" José A.G. Agúndez, David L. González-Álvarez, Miguel A. Vega-Rodríguez, Emilia Botello, Elena García-Martín. Current Drug Metabolism, Volume 15, Issue 2, Bentham Science, Sharjah, United Arab Emirates, 2014, pp. 182-195, ISSN: 1389-2002. DOI: 10.2174/138920021502140327180336. (Impact factor = 2.976)
#37 "Parallelizing and Optimizing a Hybrid Differential Evolution with Pareto Tournaments for Discovering Motifs in DNA Sequences" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Journal of Supercomputing, Volume 70, Issue 2, Springer, Dordrecht, The Netherlands, 2014, pp. 880-905, ISSN: 0920-8542. DOI: 10.1007/s11227-014-1266-y. (Impact factor = 0.858)
#38 "A Multiobjective Swarm Intelligence Approach based on Artificial Bee Colony for Reliable DNA Sequence Design" Jose M. Chaves-González, Miguel A. Vega-Rodríguez, José M. Granado-Criado. Engineering Applications of Artificial Intelligence, Volume 26, Issue 9, Pergamon-Elsevier Science, Oxford, England, 2013, pp. 2045-2057, ISSN: 0952-1976. DOI: 10.1016/j.engappai.2013.04.011. (Impact factor = 1.962)
#39 "A Parallel Cooperative Team of Multiobjective Evolutionary Algorithms for Motif Discovery" David L. González-Álvarez, Miguel A. Vega-Rodríguez. Journal of Supercomputing, Volume 66, Issue 3, Springer, Dordrecht, The Netherlands, 2013, pp. 1576-1612, ISSN: 0920-8542. DOI: 10.1007/s11227-013-0951-6. (Impact factor = 0.841)
#40 "Analysing the Scalability of Multiobjective Evolutionary Algorithms when Solving the Motif Discovery Problem" David L. González-Álvarez, Miguel A. Vega-Rodríguez. Journal of Global Optimization, Volume 57, Issue 2, Springer, Dordrecht, The Netherlands, 2013, pp. 467-497, ISSN: 0925-5001. DOI: 10.1007/s10898-013-0069-7. (Impact factor = 1.355)
#41 "Applying a Multiobjective Metaheuristic Inspired by Honey Bees to Phylogenetic Inference" Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. BioSystems, Volume 114, Issue 1, Elsevier Science, Oxford, England, 2013, pp. 39-55, ISSN: 0303-2647. DOI: 10.1016/j.biosystems.2013.07.001. (Impact factor = 1.472)
#42 "Comparing Multiobjective Swarm Intelligence Metaheuristics for DNA Motif Discovery" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Engineering Applications of Artificial Intelligence, Volume 26, Issue 1, Pergamon-Elsevier Science, Oxford, England, 2013, pp. 314-326, ISSN: 0952-1976. DOI: 10.1016/j.engappai.2012.06.014. (Impact factor = 1.962)
#43 "Predicting DNA Motifs by Using Evolutionary Multiobjective Optimization" David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. IEEE Transactions on Systems, Man, and Cybernetics - Part C: Applications and Reviews, Volume 42, Issue 6, IEEE, Piscataway, NJ, USA, 2012, pp. 913-925, ISSN: 1094-6977. DOI: 10.1109/TSMCC.2011.2172939. (Impact factor = 2.548)
#44 "Parallel Niche Pareto AlineaGA - an Evolutionary Multiobjective Approach on Multiple Sequence Alignment" Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Journal of Integrative Bioinformatics, 8(3):174, IMBio, Informationsmanagement in der Biotechnologie e.V., Gatersleben, Germany, 2011, pp. 1-16, ISSN: 1613-4516. DOI: 10.2390/biecoll-jib-2011-174.
#45 "AlineaGA - A Genetic Algorithm with Local Search Optimization for Multiple Sequence Alignment" Fernando J. M. da Silva, Juan M. Sánchez Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. Applied Intelligence, Volume 32, Issue 2, Springer, Dordrecht, The Netherlands, 2010, pp. 164-172, ISSN: 0924-669X. DOI: 10.1007/s10489-009-0189-4. (Impact factor = 0.893)

Book chapters
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#1 "Improving Multiobjective Phylogenetic Searches by Using a Parallel epsilon-Dominance Based Adaptation of the Firefly Algorithm" , in: "Euro-Par 2016: Parallel Processing Workshops, LNCS, Vol. 10104". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer International Publishing, Switzerland, 2017, pp. 384-396. ISBN: 978-3-319-58942-8.
#2 "Parallel Multi-Objective Optimization for High-Order Epistasis Detection" , in: "Algorithms and Architectures for Parallel Processing, LNCS, Vol. 10393". Daniel Gallego-Sánchez, José M. Granado-Criado, Sergio Santander-Jiménez, Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez. Springer International Publishing, Switzerland, 2017, pp. 523-532. ISBN: 978-3-319-65481-2.
#3 "Inferring Multiobjective Phylogenetic Hypotheses by Using a Parallel Indicator-Based Evolutionary Algorithm" , in: "Theory and Practice of Natural Computing, LNCS, Vol. 8890". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer, Switzerland, 2014, pp. 205-217. ISBN: 978-3-319-13748-3.
#4 "A Multiobjective Proposal Based on the Firefly Algorithm for Inferring Phylogenies" , in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7833". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 141-152. ISBN: 978-3-642-37188-2.
#5 "A Multiobjective SFLA-Based Technique for Predicting Motifs in DNA Sequences" , in: "Computer Aided Systems Theory, LNCS, Vol. 8111". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 235-242. ISBN: 978-3-642-53855-1.
#6 "A Parallel Multiobjective Algorithm Inspired by Fireflies for Inferring Evolutionary Trees on Multicore Machines" , in: "Computer Aided Systems Theory, LNCS, Vol. 8111". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 412-419. ISBN: 978-3-642-53855-1.
#7 "DNA Base-Code Generation for Bio-molecular Computing by Using a Multiobjective Approach Based on SPEA2" , in: "Computer Aided Systems Theory, LNCS, Vol. 8111". José M. Chaves-González, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 227-234. ISBN: 978-3-642-53855-1.
#8 "Hybrid Multiobjective Artificial Bee Colony with Differential Evolution Applied to Motif Finding" , in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7833". David L. González-Álvarez, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2013, pp. 68-79. ISBN: 978-3-642-37188-2.
#9 "Comparing Different Operators and Models to Improve a Multiobjective Artificial Bee Colony Algorithm for Inferring Phylogenies" , in: "Theory and Practice of Natural Computing, LNCS, Vol. 7505". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 187-200. ISBN: 978-3-642-33859-5.
#10 "Comparing Multiobjective Artificial Bee Colony Adaptations for Discovering DNA Motifs" , in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7246". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 110-121. ISBN: 978-3-642-29065-7.
#11 "Discovering DNA Motifs with a Parallel Shared Memory Differential Evolution" , in: "Computer Aided Systems Theory, LNCS, Vol. 6927". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido and Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 232-239. ISBN: 978-3-642-27548-7.
#12 "Inferring Phylogenetic Trees Using a Multiobjective Artificial Bee Colony Algorithm" , in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 7246". Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2012, pp. 144-155. ISBN: 978-3-642-29065-7.
#13 "A Parallel Niched Pareto Evolutionary Algorithm for Multiple Sequence Alignment" , in: "International Conference on Practical Applications of Computational Biology & Bioinformatics". Fernando J. Mateus da Silva, Juan M. Sánchez-Pérez, Juan A. Gómez-Pulido, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2011, pp. 157-165. ISBN: 978-3-642-19913-4.
#14 "Applying a Multiobjective Gravitational Search Algorithm (MO-GSA) to Discover Motifs" , in: "Advances in Computational Intelligence. Lecture Notes in Computer Science, vol. 6692". David L. Gónzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2011, pp. 372-379. ISBN: 978-3-642-21497-4.
#15 "Finding Motifs in DNA Sequences Applying a Multiobjective Artificial Bee Colony (MOABC) Algorithm" , in: "Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics. Lecture Notes in Computer Science, Vol. 6623". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2011, pp. 89-100. ISBN: 978-3-642-20388-6.
#16 "A Multiobjective Variable Neighborhood Search for Solving the Motif Discovery Problem" , in: "Soft Computing Models in Industrial and Environmental Applications. Advances in Intelligent and Soft Computing, Vol. 73". David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Springer-Verlag, Berlin Heidelberg, Germany, 2010, pp. 39-46. ISBN: 978-3-642-13160-8.
#17 "Using a Parallel Team of Multiobjective Evolutionary Algorithms to Solve the Motif Discovery Problem" , in: "Distributed Computing and Artificial Intelligence". David L. Gonzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gomez-Pulido, Juan M. Sanchez-Perez. Springer-Verlag, Berlin Heidelberg, Germany, 2010, pp. 569-576. ISBN: 978-3-642-14882-8.
#18 "AlineaGA: a Genetic Algorithm for Multiple Sequence Alignment" , in: "New Challenges in Applied Intelligence Technologies". Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Springer-Verlag, Berlin Heidelberg, Germany, 2008, pp. 309-318. ISBN: 978-3-540-79354-0.
#19 "Hardware Modelling of Cellular Automata: The Game of Life Case" , in: "Computer Systems Aided Theory". Juan A. Gómez-Pulido, Juan M. Matas Santiago, Francisco Pérez Rodríguez, Miguel A. Vega-Rodríguez, Juan M. Sánchez Pérez, Francisco Fernández de Vega. R. Moreno-Díaz et al. (Eds.), Springer-Verlag, Berlin Heidelberg, Germany, 2007, pp. 589-595. ISBN: 978-3-540-75866-2.

Books
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Editor of books and journals
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#1 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 10849" . Several authors. Jesper Jansson, Carlos Martín-Vide, Miguel A. Vega-Rodríguez (Eds). Springer, Switzerland, 2018. ISBN: 978-3-319-91937-9. ISSN: 0302-9743.
#2 "Proceedings of the 6th International Workshop on Parallelism in Bioinformatics (PBio 2018)" . Several authors. Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez, José M. Granado-Criado, Rosa M. Badia (Eds). ACM, New York, USA, 2018. ISBN: 978-1-4503-6531-4.
#3 "Special Issue on Parallel Computing in Computational Biology" (Journal of Computational Biology, Volume 25, Issue 8, August 2018) . Miguel A. Vega-Rodríguez, José M. Granado-Criado. Mary Ann Liebert, New Rochelle, NY, USA, 2018. ISSN: 1066-5277. (Impact factor = 1.191 in 2017)
#4 "Special Issue on Parallelism in Computational Biology" (International Journal of High Performance Computing Applications, Volume 32, Issue 3, May 2018) . Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. SAGE Publications, London, England, UK, 2018. ISSN: 1094-3420. (Impact factor = 2.015 in 2017)
#5 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 10252" . Several authors. Daniel Figueiredo, Carlos Martín-Vide, Diogo Pratas, Miguel A. Vega-Rodríguez (Eds). Springer, Switzerland, 2017. ISBN: 978-3-319-58162-0. ISSN: 0302-9743.
#6 "Special Issue on Parallelism-based Approaches in Computational Biology" (Cluster Computing-The Journal of Networks Software Tools and Applications, Volume 20, Issue 3, September 2017) . Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Springer, New York, NY, USA, 2017. ISSN: 1386-7857. (Impact factor = 1.601)
#7 "Algorithms for Computational Biology, LNCS/LNBI, Vol. 9702" . Several authors. María Botón-Fernández, Carlos Martín-Vide, Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez (Eds). Springer, Switzerland, 2016. ISBN: 978-3-319-38826-7. ISSN: 0302-9743.
#8 "Special Issue on Parallelism in Bioinformatics" (Parallel Computing, Volume 42, February 2015) . Miguel A. Vega-Rodríguez, David L. González-Álvarez. Elsevier Science, Amsterdam, The Netherlands, 2015. ISSN: 0167-8191. (Impact factor = 1.000)
#9 "Special Issue on Parallelism-based Technologies in Bioinformatics and Biomedicine" (Concurrency and Computation: Practice and Experience, Volume 27, Issue 18, December 2015) . Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Wiley-Blackwell, Malden, England, 2015. ISSN: 1532-0626. (Impact factor = 0.942)
#10 "Special Section on Advanced Parallel Computing Systems to Accelerate Bioinformatics" (IEEE-ACM Transactions on Computational Biology and Bioinformatics, Volume 12, Issue 5) . Juan A. Gomez-Pulido, Bertil Schmidt, and Wu-chun Feng. IEEE Computer Society, Los Alamitos, CA, USA, 2015. ISSN: 1545-5963. (Impact factor = 1.609)

Conferences: Communications
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#1 "Algoritmo Multi-objetivo de Murciélagos para Reconstrucción Filogenética en Procesadores Multicore" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Actas de las XXIX Jornadas de Paralelismo (JP 2018), Universidad de Zaragoza, Teruel, Spain, 2018, pp. 35-41. ISBN: 978-84-09-04334-7.
#2 "Análisis de Diseños Paralelos Multiobjetivo y Políticas de Planificación en Biología Evolutiva" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Actas del XIII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2018), parte de CAEPIA 2018, Universidad de Granada, Granada, Spain, 2018, pp. 687-692. ISBN: 978-84-09-05643-9.
#3 "Analysis of Scheduling Policies in Metaheuristics for Evolutionary Biology" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Proceedings of the 6th International Workshop on Parallelism in Bioinformatics (PBio 2018), part of EuroMPI 2018, Association for Computing Machinery (ACM), Barcelona, Spain, 2018, pp. 3-10. ISBN: 978-1-4503-6531-4.
#4 "Phylogenetic Reconstructions Using an Indicator-Based Bat Algorithm for Multicore Processors" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Leonel Sousa. Proceedings of the 2018 IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2018), IEEE Computer Society, Madrid, Spain, 2018, pp. 1-4.
#5 "Computación Heterogénea CPU+GPU Aplicada a los Cálculos de Parsimonia Filogenética" . Sergio Santander-Jiménez, Aleksandar Ilic, Leonel Sousa, Miguel A. Vega-Rodríguez. Actas de las XXVIII Jornadas de Paralelismo (JP 2017), Universidad de Malaga, Malaga, Spain, 2017, pp. 75-81. ISBN: 978-84-697-4835-0.
#6 "Integrando Paralelismo en la Metaheurística Indicator-Based Multiobjective Bat Algorithm para Reconstrucción Filogenética" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del XII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2017), Universitat Pompeu Fabra, Barcelona, Spain, 2017, pp. 824-833. ISBN: 978-84-697-4275-1.
#7 "Inteligencia Colectiva de Abejas Multiobjetivo para Alinear Múltiples Secuencias Biológicas" . Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez. Actas del XII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2017), Universitat Pompeu Fabra, Barcelona, Spain, 2017, pp. 834-843. ISBN: 978-84-697-4275-1.
#8 "Optimización Multiobjetivo para el Estudio de Asociaciones Genéticas" . Daniel Gallego-Sánchez, Álvaro Rubio-Largo, José M. Granado-Criado, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Actas del XII Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2017), Universitat Pompeu Fabra, Barcelona, Spain, 2017, pp. 844-853. ISBN: 978-84-697-4275-1.
#9 "Optimización Multiobjetivo Paralela para la Detección de Epistasia de Múltiples Loci" . Daniel Gallego-Sánchez, José M. Granado-Criado, Sergio Santander-Jiménez, Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez. Actas de las XXVIII Jornadas de Paralelismo (JP 2017), Universidad de Malaga, Malaga, Spain, 2017, pp. 83-88. ISBN: 978-84-697-4835-0.
#10 "Aplicación de Metaheurísticas Multiobjetivo Basadas en Dominancia e Indicadores para Reconstrucción Filogenética" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del XI Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2016), Ediciones Universidad de Salamanca, Salamanca, Spain, 2016, pp. 461-470. ISBN: 978-84-9012-632-5.
#11 "Metaheurística Multiobjetivo Híbrida para el Alineamiento Múltiple de Secuencias" . Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez. Actas del XI Congreso Español de Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 2016), Ediciones Universidad de Salamanca, Salamanca, Spain, 2016, pp. 315-324. ISBN: 978-84-9012-632-5.
#12 "Una Adaptación Paralela Basada en Epsilon-Dominancia del Algoritmo de las Luciérnagas para la Inferencia de Filogenias Multiobjetivo" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas de las XXVII Jornadas de Paralelismo (JP 2016), Ediciones Universidad de Salamanca, Salamanca, Spain, 2016, pp. 17-23. ISBN: 978-84-9012-626-4.
#13 "Análisis Comparativo de Implementaciones del Algoritmo Multiobjective Artificial Bee Colony para Reconstrucción Filogenética" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del X Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, Universidad de Extremadura, Mérida, Spain, 2015, pp. 369-376. ISBN: 978-84-697-2150-6.
#14 "Lossless coding analisys of medical images sequences based on HEVC" . Paulo J. Cordeiro, Juan A. Gomez-Pulido, Pedro A. Asuncao. Proceedings of the Congress on Numerical Methods in Engineering (CMN 2015), Instituto Superior Técnico, Lisboa (Portugal), 2015, pp. -.
#15 "Metaheurística Multiobjetivo Paralela para el Alineamiento Múltiple de Secuencias" . Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. Actas de las XXVI Jornadas de Paralelismo (JP 2015), Universidad de Córdoba, Córdoba, Spain, 2015, pp. 31-37. ISBN: 978-84-16017-52-2.
#16 "Paralelizando una Evolución Diferencial Multiobjetivo Híbrida para Identificar Elementos cis-Reguladores" . David L. González-Álvarez, Miguel A. Vega-Rodríguez, Álvaro Rubio-Largo. Actas de las XXVI Jornadas de Paralelismo (JP 2015), Universidad de Córdoba, Córdoba, Spain, 2015, pp. 8-13. ISBN: 978-84-16017-52-2.
#17 "Parallel H4MSA for Multiple Sequence Alignment" . Álvaro Rubio-Largo, Miguel A. Vega-Rodríguez, David L. González-Álvarez. Proceedings of the 13th IEEE International Symposium on Parallel and Distributed Processing with Applications, IEEE Computer Society, Helsinki, Finland, 2015, pp. 242-247. ISBN: 978-1-4673-7951-9.
#18 "Usando GPUs para Acelerar Reconstrucciones Filogenéticas bajo el Criterio de Parsimonia" . Sergio Santander-Jiménez, Aleksandar Ilic, Leonel Sousa, Miguel A. Vega-Rodríguez. Actas de las XXVI Jornadas de Paralelismo (JP 2015), Universidad de Córdoba, Córdoba, Spain, 2015, pp. 38-44. ISBN: 978-84-16017-52-2.
#19 "Acelerador FPGA para el cálculo de la calidad de biclústers en Bioinformática" . Juan A. Gómez Pulido, Sebastián Trinidad Amado, Ramón A. Fernández Díaz. Actas de las XIV Jornadas de Computación Reconfigurable y Aplicaciones (JCRA 2014), Sergio Cuenca Asensi (ed.). Sociedad de Arquitectura de Computadores (SARTECO), Valladolid, España, 2014, pp. 99-105. ISBN: 978-84-697-0971-9.
#20 "Applying OpenMP-based Parallel Implementations of NSGA-II and SPEA2 to Study Phylogenetic Relationships" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the IEEE International Conference on Cluster Computing (IEEE Cluster 2014), IEEE Computer Society, Madrid, Spain, 2014, pp. 305-313. ISBN: 978-1-4799-5547-3.
#21 "Estudiando Relaciones Filogenéticas Mediante Metaheurísticas Multiobjetivo Paralelas Basadas en OpenMP" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas de las XXV Jornadas de Paralelismo (JP 2014), Universidad de Valladolid, Valladolid, Spain, 2014, pp. 173-178. ISBN: 978-84-697-0329-3.
#22 "Performance Analysis of Multiobjective Artificial Bee Colony Implementations for Phylogenetic Reconstruction" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the Sixth World Congress on Nature and Biologically Inspired Computing, IEEE Computer Society, Porto, Portugal, 2014, pp. 35-40. ISBN: 978-1-4799-5937-2.
#23 "A Comparative Study on Distance Methods Applied to a Multiobjective Firefly Algorithm for Phylogenetic Inference" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the Genetic and Evolutionary Computation Conference Companion (GECCO 2013), Association for Computing Machinery (ACM), Amsterdam, The Netherlands, 2013, pp. 1587-1594. ISBN: 978-1-4503-1964-5.
#24 "An SPEA2 Based Approach for Reliable DNA Base-code Generation" . José M. Chaves-González, Miguel A. Vega-Rodríguez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2013, pp. 170-172. ISBN: 978-84-695-6971-9.
#25 "Designing a Novel Hybrid Swarm Based Multiobjective Evolutionary Algorithm for Finding DNA Motifs" . David L. González-Álvarez, Miguel A. Vega-Rodríguez. Proceedings of the Genetic and Evolutionary Computation Conference Companion (GECCO 2013), Association for Computing Machinery (ACM), Amsterdam, The Netherlands, 2013, pp. 1571-1578. ISBN: 978-1-4503-1964-5.
#26 "Detecting Over-Represented Motifs by Using Multiobjective Shuffle Frog Leaping Algorithm" . David L. González-Álvarez, Miguel A. Vega-Rodríguez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2013, pp. 173-175. ISBN: 978-84-695-6971-9.
#27 "DNA Base-code Generation for Reliable Computing by Using Standard Multi-objective Evolutionary Algorithms" . Jose M. Chaves-González, Miguel A. Vega-Rodríguez. Proceedings of the Genetic and Evolutionary Computation Conference Companion (GECCO 2013), Association for Computing Machinery (ACM), Amsterdam, The Netherlands, 2013, pp. 1617-1624. ISBN: 978-1-4503-1964-5.
#28 "Paralelizando una Aproximación Multiobjetivo y Bioinspirada para Filogenética Usando Esquemas Híbridos MPI/OpenMP" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas de las XXIV Jornadas de Paralelismo (JP 2013), Servicio de Publicaciones. Universidad Complutense de Madrid, Madrid, Spain, 2013, pp. 253-258. ISBN: 978-84-695-8330-2.
#29 "Parallelizing a Hybrid Multiobjective Differential Evolution for Identifying Cis-Regulatory Elements" . David L. González-Álvarez, Miguel A. Vega-Rodríguez. Proceedings of the 20th EuroMPI 2013, Association for Computing Machinery (ACM), Madrid, Spain, 2013, pp. 223-228. ISBN: 978-84-616-5133-7.
#30 "Parallelizing a Multiobjective Swarm Intelligence Approach to Phylogenetics Using Hybrid MPI/OpenMP Schemes" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Proceedings of the 20th EuroMPI 2013, Association for Computing Machinery (ACM), Madrid, Spain, 2013, pp. 193-198. ISBN: 978-84-616-5133-7.
#31 "Una Aproximación Multiobjetivo Basada en el Comportamiento de las Luciérnagas para la Inferencia Filogenética" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez. Actas del IX Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. M. Colmenar et al. (editores), Universidad Complutense de Madrid y Universidad Rey Juan Carlos, Madrid, Spain, 2013, pp. 614-623. ISBN: 978-84-695-8348-7.
#32 "Using OpenMP to Parallelize a Multiobjective Firefly Algorithm for Phylogenetic Inference" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2013, pp. 239-241. ISBN: 978-84-695-6971-9.
#33 "A Parallel Multi-Core Team of Multiobjective Evolutionary Algorithms to Discover DNA Motifs" . David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. 14th IEEE International Conference on High Performance Computing and Communications , IEEE Computer Society, Liverpool, UK, 2012, pp. 17-24. ISBN: 978-0-7695-4749-7.
#34 "Algoritmos Multiobjetivo Basados en Inteligencia Colectiva para Resolver el Problema del Descubrimiento de Motifs" . David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas del VIII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. A. Gámez, J. M. Puerta, F. Parreño y L. de la Ossa (editores), Universidad de Castilla-La Mancha, Albacete, Spain, 2012, pp. 329-336. ISBN: 978-84-615-6931-1.
#35 "DNA Sequence Design for Reliable DNA Computing by Using a Multiobjective Approach" . Jose M. Chaves-González, Miguel A. Vega-Rodríguez. 13th IEEE International Symposium on Computational Intelligence and Informatics, IEEE Computer Society, Budapest, Hungary, 2012, pp. 73-78. ISBN: 978-1-4673-5206-2.
#36 "Evaluando el Rendimiento Multicore de una Aproximación Multiobjetivo de Inteligencia de Enjambre para la Inferencia Filogenética" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXIII Jornadas de Paralelismo (JP 2012), Servicio de Publicaciones. Universidad Miguel Hernández, Elche, Spain, 2012, pp. 98-103. ISBN: 978-84-695-4471-6.
#37 "Evaluating the Performance of a Parallel Multiobjective Artificial Bee Colony Algorithm for Inferring Phylogenies on Multicore Architectures" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. 10th IEEE International Symposium on Parallel and Distributed Processing with Applications, IEEE Computer Society, Madrid, Spain, 2012, pp. 713-720. ISBN: 978-0-7695-4701-5.
#38 "Multiobjective Teaching-Learning-Based Optimization (MO-TLBO) for Motif Finding" . David L. González-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. 13th IEEE International Symposium on Computational Intelligence and Informatics, IEEE Computer Society, Budapest, Hungary, 2012, pp. 141-146. ISBN: 978-1-4673-5206-2.
#39 "Prediciendo Motifs en Secuencias de ADN Aplicando Búsqueda de Entornos Variables Multiobjetivo" . David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas del VIII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. A. Gámez, J. M. Puerta, F. Parreño y L. de la Ossa (editores), Universidad de Castilla-La Mancha, Albacete, Spain, 2012, pp. 125-132. ISBN: 978-84-615-6931-1.
#40 "Un Equipo Paralelo Multi-Núcleo para Descubrir Motifs en Secuencias de ADN" . David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXIII Jornadas de Paralelismo (JP 2012), Servicio de Publicaciones. Universidad Miguel Hernández, Elche, Spain, 2012, pp. 129-134. ISBN: 978-84-695-4471-6.
#41 "Un Sistema Híbrido MPI/OpenMP basado en el Algoritmo NSGA-II para la Inferencia de Árboles Filogenéticos" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXIII Jornadas de Paralelismo (JP 2012), Servicio de Publicaciones. Universidad Miguel Hernández, Elche, Spain, 2012, pp. 122-127. ISBN: 978-84-695-4471-6.
#42 "Una Adaptación Multiobjetivo y Paralela del Algoritmo Artificial Bee Colony Aplicada a la Inferencia Filogenética" . Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas del VIII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, J. A. Gámez, J. M. Puerta, F. Parreño y L. de la Ossa (editores), Universidad de Castilla-La Mancha, Albacete, Spain, 2012, pp. 375-382. ISBN: 978-84-615-6931-1.
#43 "A Parallel Differential Evolution to Solve the Motif Discovery Problem by Using OpenMP" . David L. Gónzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Computer Aided Systems Theory - Extended Abstracts, A. Quesada, J.C. Rodriguez, R. Moreno jr., R. Moreno (Eds.). IUCTC. Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain, 2011, pp. 239-241. ISBN: 978-84-693-9560-8.
#44 "Comparación de Algoritmos Evolutivos Paralelos y Secuenciales para el Alineamiento Múltiple de Secuencias" . Fernando José Mateus Silva, Juan Manuel Sánchez-Pérez, Juan Antonio Gómez-Pulido and Miguel A. Vega-Rodríguez. Actas de las XXII Jornadas de Paralelismo (JP2011), Servicio de Publicaciones. Universidad de La Laguna, La Laguna, Tenerife, España, 2011, pp. 9-14. ISBN: 978-84-694-1791-1.
#45 "Una Versión Paralela de la Evolución Diferencial para Predecir Motifs en Cadenas de ADN" . David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido, Juan M. Sánchez-Pérez. Actas de las XXII Jornadas de Paralelismo (JP2011), Servicio de Publicaciones. Universidad de La Laguna, La Laguna, Tenerife, España, 2011, pp. 3-8. ISBN: 978-84-694-1791-1.
#46 "A Niched Pareto Genetic Algorithm For Multiple Sequence Alignment Optimization" . Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Proceedings of the International Conference on Agents and Artificial Intelligence (ICAART 2010), Institute for Systems and Technologies of Information, Control and Communication (INSTICC), Valencia, Spain, 2010, pp. 323-329. ISBN: 978-989-674-021-4.
#47 "An Evolutionary Approach for Performing Multiple Sequence Alignment" . Fernando J. Mateus-Silva, Juan M. Sánchez-Pérez, Juan A. Gómez-Pulido, Miguel A. Vega-Rodríguez. Proceedings of the 2010 IEEE Congress on Evolutionary Computation (CEC 2010), IEEE Computer Society, Barcelona, Spain, 2010, pp. 992-998. ISBN: 978-1-4244-6910-9.
#48 "Parallel AlineaGA: An Island Parallel Evolutionary Algorithm for Multiple Sequence Alignment" . Fernando José Mateus da Silva, Juan Manuel Sánchez Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. Proceedings of the International Conference on Soft Computing and Pattern Recognition (SoCPaR 2010), IEEE Computer Society, Paris, France, 2010, pp. 279-284. ISBN: 978-1-4244-7896-5.
#49 "Resolviendo el Problema del Descubrimiento de Motifs Mediante Evolución Diferencial con Torneos de Pareto" . David L. González-Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez-Pulido y Juan M. Sánchez-Pérez. Actas de MAEB 2010. VII Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados, Ibergarceta Publicaciones S.L., Valencia, España, 2010, pp. 11-18. ISBN: 978-84-92812-58-5.
#50 "Solving the Motif Discovery Problem by Using Differential Evolution with Pareto Tournaments" . David L. Gonzalez-Alvarez, Miguel A. Vega-Rodríguez, Juan A. Gomez-Pulido, Juan M. Sanchez-Perez. Proceedings of the 2010 IEEE Congress on Evolutionary Computation (CEC 2010), IEEE Computer Society, Barcelona, Spain, 2010, pp. 4140-4147. ISBN: 978-1-4244-6910-9.
#51 "Un Equipo Paralelo de Algoritmos Evolutivos Multiobjetivo para Resolver el Problema del Descubrimiento de Motifs" . David L. González Álvarez, Miguel A. Vega-Rodríguez, Juan A. Gómez Pulido, Juan M. Sánchez Pérez. Actas de las XXI Jornadas de Paralelismo, Ibergarceta Publicaciones S.L., Valencia, España, 2010, pp. 35-42. ISBN: 978-84-92812-49-3.
#52 "Optimizing Multiple Sequence Alignment by Improving Mutation Operators of a Genetic Algorithm" . Fernando J. Mateus da Silva , Juan M. Sánchez-Pérez, Juan A. Gómez-Pulido, Miguel A. Vega-Rodríguez. Proceedings of the 9th International Conference on Intelligent Systems Design and Applications, IEEE Computer Society, Pisa, Italy, 2009, pp. 1257-1262. ISBN: 978-0-7695-3872-3.
#53 "Un Algoritmo Genético para Alineamiento Múltiple de Secuencias" . Fernando J. Mateus da Silva, Juan M. Sánchez-Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. Actas del VI Congreso Español sobre Metaheurísticas, Algoritmos Evolutivos y Bioinspirados (MAEB 09), E. Alba, F. Chicano, F. Luga, G. Luque, Universidad de Málaga, Málaga, España, 2009, pp. 525-532. ISBN: 978-84-691-6813-4.
#54 "Alineamiento Múltiple de Secuencias utilizando Algoritmos Genéticos: Revisión" . Fernando Silva, Juan M. Sánchez Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. Actas de las I Jornadas sobre Algoritmos Evolutivos y Metaheurísticas (JAEM07), Thomson, Zaragoza, España, 2007, pp. 41-48. ISBN: 978-84-9732-614-8.
#55 "Sistema Web de Auto-Evaluación en Patología Infecciosa" . Juan A. Gómez-Pulido, Juan M. Alonso-Rodríguez, Juan M. Sánchez-Pérez, Miguel A. Vega-Rodríguez. Informática Educativa: Nuevos Retos, Servicio de Publicaciones, Universidad de Extremadura, Caceres, Spain, 2004, pp. 1-5. ISBN: 84-7723-653-4.
#56 "Combination of AI Tools and Multimodeling for Real-Time Supervision of a Bioprocess" . J.M. Girón Sierra, J.A. Gómez Pulido and B. Andrés-Toro. Proceedings First Join Conference of International Simulation Societies, The Society for Computer Simulation, Zurich, Switzerland, 1994, pp. 151-156. ISBN: 1-56555-031-5.
#57 "Simulation Based Real-Time Monitoring of an Experimental Bioprocess Using an Expert System Shell" . José M. Girón Sierra, Juan A. Gómez Pulido and Bonifacio Andrés-Toro. Proceedings IASTED Conference on Modelling and Simulation '94, IASTED, Pittsburgh. Pennsylvania, USA, 1994, pp. -.

Conferences: Posters
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#1 "Multiple Sequence Alignments Using Genetic Algorithms: a Review" . Fernando Silva, Juan M. Sánchez Pérez, Juan A. Gómez Pulido, Miguel A. Vega-Rodríguez. 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE2007), , Boston, Massachusetts, USA, 2007, pp. 1-8.

Other publications
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Total: 132